Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38156 * 119.98216 * 2 1 4 4 C 1.38704 * 119.95938 * 179.97438 * 3 2 1 5 5 O 1.35921 * 120.04489 * 180.02562 * 4 3 2 6 6 C 1.38739 * 119.91354 * 359.73182 * 4 3 2 7 7 C 1.50702 * 120.02525 * 180.27196 * 6 4 3 8 8 H 1.09003 * 109.46687 * 0.27348 * 7 6 4 9 9 C 1.50700 * 109.47107 * 240.27397 * 7 6 4 10 10 H 1.07997 * 120.00190 * 275.07144 * 9 7 6 11 11 C 1.37875 * 119.99926 * 95.07324 * 9 7 6 12 12 N 1.31511 * 120.00041 * 5.66360 * 11 9 7 13 13 Si 1.86801 * 119.99793 * 185.66460 * 11 9 7 14 14 H 1.48499 * 109.47167 * 90.00116 * 13 11 9 15 15 H 1.48507 * 109.46832 * 209.99707 * 13 11 9 16 16 H 1.48495 * 109.47438 * 329.99819 * 13 11 9 17 17 C 1.52999 * 109.47046 * 120.27289 * 7 6 4 18 18 N 1.46907 * 109.46834 * 185.34887 * 17 7 6 19 19 C 1.38125 * 119.95857 * 0.54830 * 6 4 3 20 20 C 1.38345 * 119.97232 * 179.97438 * 2 1 3 21 21 Cl 1.73594 * 119.96184 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.47097 * 270.02094 * 1 2 3 23 23 H 1.09000 * 109.46625 * 30.01816 * 1 2 3 24 24 H 1.08997 * 109.47065 * 150.01659 * 1 2 3 25 25 H 1.08001 * 120.02046 * 359.95957 * 3 2 1 26 26 H 0.96703 * 113.99887 * 90.00330 * 5 4 3 27 27 H 0.97002 * 120.00123 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47354 * 305.34828 * 17 7 6 29 29 H 1.09004 * 109.47299 * 65.35052 * 17 7 6 30 30 H 1.00901 * 110.99520 * 56.04943 * 18 17 7 31 31 H 1.00896 * 110.99598 * 180.02562 * 18 17 7 32 32 H 1.08000 * 119.98581 * 179.72655 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1967 0.0000 4 6 3.5845 1.1961 0.0005 5 8 4.2655 2.3724 0.0011 6 6 4.2759 -0.0067 0.0067 7 6 5.7829 -0.0102 0.0135 8 1 6.1486 1.0167 0.0174 9 6 6.2891 -0.7190 -1.2163 10 1 6.3887 -1.7944 -1.2172 11 6 6.6252 0.0054 -2.3402 12 7 6.6108 1.3199 -2.3039 13 14 7.1010 -0.8804 -3.9145 14 1 5.8864 -1.1186 -4.7349 15 1 8.0604 -0.0457 -4.6815 16 1 7.7345 -2.1808 -3.5788 17 6 6.2856 -0.7354 1.2634 18 7 7.7489 -0.6281 1.3365 19 6 3.5822 -1.2011 0.0008 20 6 2.1982 -1.1984 0.0005 21 17 1.3285 -2.7008 0.0019 22 1 -0.3633 0.0004 1.0276 23 1 -0.3632 0.8898 -0.5141 24 1 -0.3633 -0.8901 -0.5136 25 1 1.6575 2.1320 -0.0007 26 1 4.4623 2.7126 0.8847 27 1 6.8469 1.8296 -3.0948 28 1 5.8432 -0.2808 2.1499 29 1 6.0004 -1.7863 1.2132 30 1 8.0419 0.3372 1.3191 31 1 8.1056 -1.1000 2.1539 32 1 4.1200 -2.1376 0.0012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -57.933079 kcal Electronic energy + Delta-G solvation = -16966.067378 eV Core-core repulsion = 14144.120648 eV Total energy + Delta-G solvation = -2821.946730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87122 -38.06055 -37.12049 -36.69157 -34.16329 -33.46289 -30.51247 -30.26686 -27.08143 -25.77823 -23.77156 -22.71143 -21.26345 -18.75343 -18.50189 -17.35159 -16.92504 -16.57576 -15.99911 -15.80516 -15.26992 -14.84177 -14.65232 -14.30625 -14.01139 -13.63677 -13.40117 -13.24297 -12.96288 -12.68440 -12.65099 -12.51193 -12.41125 -11.99312 -11.78488 -11.36572 -11.09779 -10.90407 -10.45392 -9.56361 -9.24780 -9.05282 -8.00010 -6.03937 0.28397 0.49032 1.25366 1.40004 1.42041 1.50391 2.47602 2.71768 3.29805 3.48474 3.92883 3.95984 4.08119 4.41314 4.51863 4.60936 4.75076 4.76220 4.84629 4.86330 5.06651 5.12634 5.28263 5.43267 5.48450 5.66278 5.78994 5.93592 6.03214 6.36886 6.58093 6.90938 7.03253 7.09341 7.56672 9.04990 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.007940 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.484973 B = 3525.690389 C = 3698.801951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.097 3.903 5 O -0.492 6.492 6 C -0.072 4.072 7 C 0.069 3.931 8 H 0.054 0.946 9 C -0.485 4.485 10 H 0.042 0.958 11 C 0.020 3.980 12 N -0.902 5.902 13 Si 0.934 3.066 14 H -0.285 1.285 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.088 3.912 18 N -0.843 5.843 19 C -0.099 4.099 20 C -0.055 4.055 21 Cl -0.071 7.071 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.150 0.850 26 H 0.393 0.607 27 H 0.254 0.746 28 H 0.011 0.989 29 H 0.050 0.950 30 H 0.338 0.662 31 H 0.339 0.661 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -1.201 8.492 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.089 4.089 3 C -0.160 4.160 4 C 0.052 3.948 5 O -0.303 6.303 6 C -0.074 4.074 7 C 0.050 3.950 8 H 0.073 0.927 9 C -0.523 4.523 10 H 0.060 0.940 11 C -0.180 4.180 12 N -0.541 5.541 13 Si 0.761 3.239 14 H -0.211 1.211 15 H -0.212 1.212 16 H -0.195 1.195 17 C -0.043 4.043 18 N -0.372 5.372 19 C -0.118 4.118 20 C -0.081 4.081 21 Cl -0.042 7.042 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.168 0.832 26 H 0.250 0.750 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.067 -1.643 7.083 12.418 hybrid contribution 0.450 0.061 0.188 0.491 sum -9.617 -1.581 7.270 12.159 Atomic orbital electron populations 1.20827 0.88107 1.03777 1.03644 1.19749 0.97925 0.90192 1.01061 1.21340 0.92656 0.98576 1.03397 1.18623 0.90102 0.85550 1.00553 1.84956 1.76508 1.35356 1.33461 1.20986 0.98992 0.91727 0.95712 1.17845 0.86097 0.98300 0.92804 0.92743 1.20942 1.41439 0.92420 0.97489 0.94019 1.25535 0.95845 0.95442 1.01157 1.70066 1.49466 1.05513 1.29021 0.85935 0.77689 0.79039 0.81238 1.21138 1.21208 1.19541 1.21702 0.87840 0.99185 0.95587 1.58375 1.10892 1.20679 1.47301 1.20736 0.91734 0.98537 1.00800 1.20847 0.91865 0.86997 1.08437 1.98299 1.76436 1.32386 1.97104 0.89431 0.90014 0.91063 0.83216 0.75047 0.93697 0.97048 0.93148 0.84984 0.84802 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.61 71.24 0.68 -1.73 16 2 C -0.09 -2.75 5.88 -19.86 -0.12 -2.87 16 3 C -0.14 -4.67 9.64 22.36 0.22 -4.46 16 4 C 0.10 3.86 6.68 22.50 0.15 4.01 16 5 O -0.49 -19.53 12.27 -92.66 -1.14 -20.66 16 6 C -0.07 -3.13 4.78 -19.77 -0.09 -3.22 16 7 C 0.07 3.23 2.22 -12.29 -0.03 3.21 16 8 H 0.05 2.85 6.08 -2.39 -0.01 2.84 16 9 C -0.48 -26.28 7.67 25.60 0.20 -26.08 16 10 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 11 C 0.02 1.11 5.45 84.65 0.46 1.57 16 12 N -0.90 -52.72 12.77 21.45 0.27 -52.45 16 13 Si 0.93 45.47 29.54 68.60 2.03 47.50 16 14 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 17 C 0.09 3.49 5.89 86.30 0.51 3.99 16 18 N -0.84 -31.50 9.35 -186.70 -1.75 -33.25 16 19 C -0.10 -3.97 8.65 22.28 0.19 -3.78 16 20 C -0.05 -1.90 6.31 22.33 0.14 -1.76 16 21 Cl -0.07 -2.09 27.29 -2.72 -0.07 -2.16 16 22 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 24 H 0.07 1.59 6.90 -2.39 -0.02 1.57 16 25 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 26 H 0.39 11.26 9.06 -74.06 -0.67 10.59 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 2.02 7.58 -2.38 -0.02 2.01 16 30 H 0.34 12.47 8.99 -89.69 -0.81 11.66 16 31 H 0.34 10.15 9.08 -89.70 -0.81 9.34 16 32 H 0.12 4.91 7.64 -2.91 -0.02 4.89 16 Total: -1.00 -64.49 289.22 0.54 -63.95 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -1.12 Total: 28.19 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 2.31 Total: -31.11 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -1.47 Total: -85.70 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.14 Total: -20.66 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.07 Total: -2.16 kcal Total: -64.49 0.54 -63.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.021 kcal (2) G-P(sol) polarization free energy of solvation -64.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds