Wall clock time and date at job start Mon Mar 30 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38161 * 119.98391 * 2 1 4 4 C 1.38697 * 119.95851 * 179.97438 * 3 2 1 5 5 O 1.35928 * 120.04393 * 179.97438 * 4 3 2 6 6 C 1.38739 * 119.91867 * 0.02562 * 4 3 2 7 7 C 1.50696 * 120.02650 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47368 * 359.97289 * 7 6 4 9 9 C 1.50702 * 109.47710 * 119.97408 * 7 6 4 10 10 H 1.08004 * 119.99538 * 359.97438 * 9 7 6 11 11 C 1.37873 * 120.00398 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00010 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99963 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47138 * 59.99590 * 13 11 9 15 15 H 1.48499 * 109.46926 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46873 * 299.99804 * 13 11 9 17 17 C 1.53000 * 109.47282 * 239.97771 * 7 6 4 18 18 N 1.46895 * 109.47169 * 64.99506 * 17 7 6 19 19 C 1.38125 * 119.95713 * 359.97438 * 6 4 3 20 20 C 1.38355 * 119.97499 * 179.97438 * 2 1 3 21 21 Cl 1.73592 * 119.95685 * 0.02785 * 20 2 1 22 22 H 1.09003 * 109.47192 * 89.99588 * 1 2 3 23 23 H 1.08999 * 109.47872 * 210.00394 * 1 2 3 24 24 H 1.09005 * 109.46812 * 330.00701 * 1 2 3 25 25 H 1.08004 * 120.02075 * 0.02562 * 3 2 1 26 26 H 0.96695 * 114.00206 * 270.02418 * 5 4 3 27 27 H 0.97003 * 120.00726 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.47446 * 184.99718 * 17 7 6 29 29 H 1.09001 * 109.46723 * 304.99580 * 17 7 6 30 30 H 1.00900 * 110.99795 * 56.05187 * 18 17 7 31 31 H 1.00902 * 111.00283 * 180.02562 * 18 17 7 32 32 H 1.07998 * 119.98307 * 179.72240 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1961 0.0005 5 8 4.2654 2.3724 0.0000 6 6 4.2758 -0.0067 0.0005 7 6 5.7828 -0.0102 0.0017 8 1 6.1486 1.0166 0.0020 9 6 6.2827 -0.7218 1.2325 10 1 5.5793 -1.1302 1.9431 11 6 7.6377 -0.8504 1.4520 12 7 8.4941 -0.3526 0.5870 13 14 8.2572 -1.7331 2.9773 14 1 7.7595 -3.1321 2.9761 15 1 9.7422 -1.7364 2.9785 16 1 7.7623 -1.0327 4.1897 17 6 6.2921 -0.7326 -1.2472 18 7 5.9061 0.0270 -2.4438 19 6 3.5821 -1.2011 0.0005 20 6 2.1982 -1.1985 0.0005 21 17 1.3284 -2.7008 0.0005 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3635 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6575 2.1321 0.0004 26 1 4.4625 2.7124 -0.8835 27 1 9.4475 -0.4434 0.7411 28 1 7.3782 -0.8133 -1.2027 29 1 5.8552 -1.7301 -1.2934 30 1 6.2451 0.9760 -2.3946 31 1 6.2308 -0.4302 -3.2827 32 1 4.1199 -2.1376 -0.0040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:27 Heat of formation + Delta-G solvation = -41.316558 kcal Electronic energy + Delta-G solvation = -16931.714787 eV Core-core repulsion = 14110.488603 eV Total energy + Delta-G solvation = -2821.226184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.48174 -36.73357 -35.65133 -35.24478 -32.22276 -32.00310 -29.12486 -28.77950 -25.62602 -23.79069 -22.37135 -21.35809 -19.57626 -17.39510 -16.59830 -15.89814 -15.49764 -14.70939 -14.64823 -14.29093 -13.66883 -13.45117 -13.26586 -12.76009 -12.43610 -12.10806 -11.97745 -11.76431 -11.50749 -11.30572 -10.98622 -10.86925 -10.51883 -10.50363 -10.22711 -9.98894 -9.40928 -9.30730 -8.52064 -8.14190 -7.73871 -7.58105 -6.10431 -4.17469 1.68689 1.91033 2.60489 3.28043 3.32007 3.36118 4.10710 4.38026 4.80359 5.17989 5.23022 5.29121 5.60523 5.65746 5.78123 5.85657 6.04372 6.11212 6.28082 6.47789 6.67261 6.74710 6.87263 6.94676 7.08625 7.32383 7.46596 7.79050 7.88651 7.97909 8.25236 8.27535 8.36204 8.85839 9.47108 10.93800 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.007524 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.263853 B = 3720.689263 C = 4221.914087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.140 4.140 4 C 0.104 3.896 5 O -0.490 6.490 6 C -0.026 4.026 7 C 0.084 3.916 8 H 0.047 0.953 9 C -0.509 4.509 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.061 3.939 18 N -0.859 5.859 19 C -0.084 4.084 20 C -0.043 4.043 21 Cl -0.090 7.090 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.124 0.876 26 H 0.382 0.618 27 H 0.262 0.738 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.328 0.672 31 H 0.321 0.679 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 1.009 -4.327 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.159 4.159 4 C 0.060 3.940 5 O -0.299 6.299 6 C -0.026 4.026 7 C 0.065 3.935 8 H 0.065 0.935 9 C -0.547 4.547 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.068 4.068 18 N -0.386 5.386 19 C -0.103 4.103 20 C -0.070 4.070 21 Cl -0.062 7.062 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.142 0.858 26 H 0.237 0.763 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.025 0.681 -3.486 11.583 hybrid contribution 1.464 -0.461 0.155 1.543 sum -9.561 0.220 -3.331 10.127 Atomic orbital electron populations 1.20740 0.91059 1.02674 1.02101 1.19291 0.95859 0.91043 1.03373 1.21025 0.93496 0.97099 1.04255 1.18362 0.89090 0.85616 1.00962 1.84825 1.76422 1.35954 1.32746 1.20676 0.99102 0.90408 0.92463 1.17814 0.84033 0.98170 0.93440 0.93525 1.21051 0.91605 1.36363 1.05692 0.92292 1.24947 0.96783 0.95409 0.96623 1.69840 1.02162 1.45534 1.35456 0.86598 0.77522 0.80260 0.83385 1.20106 1.21233 1.20108 1.22088 1.01247 0.95361 0.88139 1.59051 1.68179 1.06214 1.05133 1.20800 0.90593 0.99479 0.99393 1.20754 0.92325 0.85531 1.08376 1.98300 1.77104 1.33569 1.97182 0.91468 0.91321 0.91813 0.85786 0.76292 0.92797 0.91272 0.93778 0.86178 0.86922 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.61 36.00 0.35 -1.04 16 2 C -0.09 -1.55 5.88 -104.61 -0.62 -2.17 16 3 C -0.14 -2.36 9.64 -39.44 -0.38 -2.74 16 4 C 0.10 2.02 6.68 -39.23 -0.26 1.75 16 5 O -0.49 -8.98 12.27 -19.51 -0.24 -9.21 16 6 C -0.03 -0.55 4.48 -104.48 -0.47 -1.01 16 7 C 0.08 2.01 2.06 -92.92 -0.19 1.82 16 8 H 0.05 1.21 6.99 -51.93 -0.36 0.85 16 9 C -0.51 -13.55 8.24 -34.44 -0.28 -13.84 16 10 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 11 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 12 N -0.89 -24.31 11.29 55.43 0.63 -23.69 16 13 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.06 1.37 5.91 -3.83 -0.02 1.35 16 18 N -0.86 -15.73 9.34 -10.37 -0.10 -15.83 16 19 C -0.08 -1.70 8.44 -39.57 -0.33 -2.03 16 20 C -0.04 -0.78 6.31 -39.48 -0.25 -1.03 16 21 Cl -0.09 -1.41 27.28 -51.86 -1.41 -2.83 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.85 6.90 -51.93 -0.36 0.50 16 24 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 26 H 0.38 5.26 9.06 45.56 0.41 5.67 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.07 1.73 5.95 -51.93 -0.31 1.42 16 29 H 0.04 1.00 7.22 -51.93 -0.37 0.62 16 30 H 0.33 5.72 8.99 -39.29 -0.35 5.37 16 31 H 0.32 5.22 9.08 -39.29 -0.36 4.86 16 32 H 0.13 2.75 7.54 -52.49 -0.40 2.36 16 LS Contribution 285.51 15.07 4.30 4.30 Total: -1.00 -28.28 285.51 -7.29 -35.57 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -2.90 Total: 13.05 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -2.55 Total: -17.32 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.53 Total: -39.51 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.24 Total: -9.21 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.41 Total: -2.83 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.28 -7.29 -35.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.744 kcal (2) G-P(sol) polarization free energy of solvation -28.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds