Wall clock time and date at job start Mon Mar 30 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38161 * 119.98391 * 2 1 4 4 C 1.38697 * 119.95851 * 179.97438 * 3 2 1 5 5 O 1.35928 * 120.04393 * 179.97438 * 4 3 2 6 6 C 1.38739 * 119.91867 * 0.02562 * 4 3 2 7 7 C 1.50696 * 120.02650 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47368 * 359.97289 * 7 6 4 9 9 C 1.50702 * 109.47710 * 119.97408 * 7 6 4 10 10 H 1.08004 * 119.99538 * 359.97438 * 9 7 6 11 11 C 1.37873 * 120.00398 * 180.02562 * 9 7 6 12 12 N 1.31509 * 120.00010 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99963 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47138 * 59.99590 * 13 11 9 15 15 H 1.48499 * 109.46926 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46873 * 299.99804 * 13 11 9 17 17 C 1.53000 * 109.47282 * 239.97771 * 7 6 4 18 18 N 1.46895 * 109.47169 * 64.99506 * 17 7 6 19 19 C 1.38125 * 119.95713 * 359.97438 * 6 4 3 20 20 C 1.38355 * 119.97499 * 179.97438 * 2 1 3 21 21 Cl 1.73592 * 119.95685 * 0.02785 * 20 2 1 22 22 H 1.09003 * 109.47192 * 89.99588 * 1 2 3 23 23 H 1.08999 * 109.47872 * 210.00394 * 1 2 3 24 24 H 1.09005 * 109.46812 * 330.00701 * 1 2 3 25 25 H 1.08004 * 120.02075 * 0.02562 * 3 2 1 26 26 H 0.96695 * 114.00206 * 270.02418 * 5 4 3 27 27 H 0.97003 * 120.00726 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.47446 * 184.99718 * 17 7 6 29 29 H 1.09001 * 109.46723 * 304.99580 * 17 7 6 30 30 H 1.00900 * 110.99795 * 56.05187 * 18 17 7 31 31 H 1.00902 * 111.00283 * 180.02562 * 18 17 7 32 32 H 1.07998 * 119.98307 * 179.72240 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1961 0.0005 5 8 4.2654 2.3724 0.0000 6 6 4.2758 -0.0067 0.0005 7 6 5.7828 -0.0102 0.0017 8 1 6.1486 1.0166 0.0020 9 6 6.2827 -0.7218 1.2325 10 1 5.5793 -1.1302 1.9431 11 6 7.6377 -0.8504 1.4520 12 7 8.4941 -0.3526 0.5870 13 14 8.2572 -1.7331 2.9773 14 1 7.7595 -3.1321 2.9761 15 1 9.7422 -1.7364 2.9785 16 1 7.7623 -1.0327 4.1897 17 6 6.2921 -0.7326 -1.2472 18 7 5.9061 0.0270 -2.4438 19 6 3.5821 -1.2011 0.0005 20 6 2.1982 -1.1985 0.0005 21 17 1.3284 -2.7008 0.0005 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3635 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6575 2.1321 0.0004 26 1 4.4625 2.7124 -0.8835 27 1 9.4475 -0.4434 0.7411 28 1 7.3782 -0.8133 -1.2027 29 1 5.8552 -1.7301 -1.2934 30 1 6.2451 0.9760 -2.3946 31 1 6.2308 -0.4302 -3.2827 32 1 4.1199 -2.1376 -0.0040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:26 Heat of formation + Delta-G solvation = -60.970922 kcal Electronic energy + Delta-G solvation = -16932.567065 eV Core-core repulsion = 14110.488603 eV Total energy + Delta-G solvation = -2822.078461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92395 -38.09447 -37.22225 -36.73397 -34.14746 -33.42745 -30.55663 -30.34243 -27.17379 -25.60946 -23.82470 -22.86141 -21.22642 -18.84960 -18.46170 -17.44165 -16.98669 -16.54078 -16.12383 -15.86545 -15.19356 -14.82536 -14.66764 -14.28846 -13.94526 -13.65963 -13.43177 -13.18929 -13.03468 -12.87737 -12.65371 -12.53654 -12.02805 -11.99073 -11.84209 -11.71650 -11.21789 -10.96724 -10.53560 -9.57589 -9.34549 -9.06856 -8.12787 -6.26914 0.26707 0.49570 1.25282 1.39880 1.40198 1.47999 2.39254 2.71298 3.12846 3.45968 3.94101 3.98119 4.09108 4.33133 4.50868 4.73433 4.75000 4.83714 4.86877 5.03328 5.10739 5.27902 5.33488 5.47241 5.50843 5.53721 5.84571 5.92159 6.01702 6.21015 6.52037 6.71203 6.90865 6.97712 7.39916 8.88478 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.007524 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.263853 B = 3720.689263 C = 4221.914087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.085 4.085 3 C -0.134 4.134 4 C 0.096 3.904 5 O -0.503 6.503 6 C -0.056 4.056 7 C 0.092 3.908 8 H 0.019 0.981 9 C -0.527 4.527 10 H 0.046 0.954 11 C 0.021 3.979 12 N -0.911 5.911 13 Si 0.948 3.052 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.276 1.276 17 C 0.078 3.922 18 N -0.846 5.846 19 C -0.098 4.098 20 C -0.052 4.052 21 Cl -0.071 7.071 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.156 0.844 26 H 0.400 0.600 27 H 0.262 0.738 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.335 0.665 31 H 0.336 0.664 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 1.372 -4.436 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.086 4.086 3 C -0.153 4.153 4 C 0.051 3.949 5 O -0.314 6.314 6 C -0.056 4.056 7 C 0.073 3.927 8 H 0.038 0.962 9 C -0.566 4.566 10 H 0.064 0.936 11 C -0.178 4.178 12 N -0.550 5.550 13 Si 0.774 3.226 14 H -0.196 1.196 15 H -0.205 1.205 16 H -0.201 1.201 17 C -0.053 4.053 18 N -0.374 5.374 19 C -0.117 4.117 20 C -0.079 4.079 21 Cl -0.043 7.043 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.174 0.826 26 H 0.258 0.742 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.031 1.048 -3.621 13.565 hybrid contribution 2.004 -0.559 0.150 2.086 sum -11.027 0.488 -3.471 11.571 Atomic orbital electron populations 1.20839 0.87962 1.03973 1.03635 1.19768 0.97988 0.90087 1.00759 1.21322 0.92378 0.98679 1.02882 1.18520 0.90238 0.85080 1.01015 1.84766 1.76626 1.35526 1.34511 1.20484 0.97673 0.91937 0.95551 1.17549 0.86222 0.96034 0.92929 0.96246 1.21341 0.91783 1.36670 1.06764 0.93576 1.25610 0.97005 0.96134 0.99075 1.69951 1.02184 1.46287 1.36597 0.85756 0.77209 0.79337 0.80298 1.19642 1.20548 1.20133 1.21706 0.98973 0.95231 0.89378 1.58903 1.67850 1.06292 1.04335 1.20671 0.91865 0.98409 1.00739 1.20836 0.91681 0.87139 1.08207 1.98301 1.76357 1.32521 1.97083 0.89641 0.91047 0.89568 0.82597 0.74243 0.92849 0.94254 0.94770 0.85394 0.85296 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.61 71.23 0.68 -1.60 16 2 C -0.09 -2.55 5.88 -19.86 -0.12 -2.66 16 3 C -0.13 -4.15 9.64 22.36 0.22 -3.93 16 4 C 0.10 3.63 6.68 22.50 0.15 3.78 16 5 O -0.50 -18.05 12.27 -92.74 -1.14 -19.19 16 6 C -0.06 -2.40 4.48 -19.77 -0.09 -2.49 16 7 C 0.09 4.50 2.06 -12.29 -0.03 4.47 16 8 H 0.02 1.04 6.99 -2.38 -0.02 1.03 16 9 C -0.53 -28.99 8.24 25.60 0.21 -28.77 16 10 H 0.05 2.58 7.60 -2.91 -0.02 2.56 16 11 C 0.02 1.15 5.29 84.65 0.45 1.60 16 12 N -0.91 -50.88 11.29 21.44 0.24 -50.64 16 13 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.08 3.57 5.91 86.30 0.51 4.08 16 18 N -0.85 -30.96 9.34 -186.72 -1.74 -32.70 16 19 C -0.10 -4.00 8.44 22.28 0.19 -3.81 16 20 C -0.05 -1.80 6.31 22.33 0.14 -1.65 16 21 Cl -0.07 -2.12 27.28 -2.72 -0.07 -2.19 16 22 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.51 6.90 -2.39 -0.02 1.49 16 24 H 0.09 1.49 8.09 -2.38 -0.02 1.47 16 25 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.40 10.66 9.06 -74.06 -0.67 9.99 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.04 2.04 5.95 -2.39 -0.01 2.02 16 29 H 0.03 1.60 7.22 -2.39 -0.02 1.58 16 30 H 0.33 11.65 8.99 -89.69 -0.81 10.85 16 31 H 0.34 10.73 9.08 -89.69 -0.81 9.92 16 32 H 0.11 4.94 7.54 -2.91 -0.02 4.92 16 Total: -1.00 -61.37 285.51 0.52 -60.86 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -1.11 Total: 29.23 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 2.32 Total: -31.00 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.50 Total: -83.34 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.14 Total: -19.19 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.07 Total: -2.19 kcal Total: -61.37 0.52 -60.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.115 kcal (2) G-P(sol) polarization free energy of solvation -61.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds