Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99562 * 2 1 4 4 C 1.38728 * 120.05355 * 359.97438 * 3 2 1 5 5 C 1.38232 * 119.93539 * 180.02562 * 4 3 2 6 6 Cl 1.73600 * 119.98522 * 180.02562 * 5 4 3 7 7 C 1.38407 * 120.02806 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.95272 * 180.02562 * 7 5 4 9 9 C 1.38222 * 120.09906 * 0.04693 * 7 5 4 10 10 C 1.50702 * 119.96616 * 179.97438 * 9 7 5 11 11 H 1.09003 * 109.47211 * 40.00153 * 10 9 7 12 12 N 1.46904 * 109.47148 * 159.99627 * 10 9 7 13 13 C 1.50696 * 109.47387 * 279.99682 * 10 9 7 14 14 H 1.08008 * 119.99908 * 354.51672 * 13 10 9 15 15 C 1.37875 * 120.00365 * 174.51011 * 13 10 9 16 16 N 1.31513 * 119.99993 * 163.73232 * 15 13 10 17 17 Si 1.86803 * 119.99674 * 343.73467 * 15 13 10 18 18 H 1.48501 * 109.46722 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47299 * 299.99400 * 17 15 13 20 20 H 1.48500 * 109.47290 * 59.99891 * 17 15 13 21 21 C 1.38175 * 120.07047 * 0.22691 * 9 7 5 22 22 H 1.08994 * 109.47283 * 60.00257 * 1 2 3 23 23 H 1.09000 * 109.46728 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46832 * 299.99757 * 1 2 3 25 25 H 1.08005 * 120.02921 * 0.04874 * 4 3 2 26 26 H 1.08996 * 109.47162 * 270.02345 * 8 7 5 27 27 H 1.09008 * 109.47113 * 30.01965 * 8 7 5 28 28 H 1.09002 * 109.47642 * 150.02035 * 8 7 5 29 29 H 1.00904 * 110.99471 * 66.16761 * 12 10 9 30 30 H 1.00901 * 110.99943 * 190.11646 * 12 10 9 31 31 H 0.96996 * 120.00243 * 1.13393 * 16 15 13 32 32 H 1.08001 * 120.01644 * 179.74524 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3751 -0.0005 5 6 1.9213 3.6055 -0.0011 6 17 0.9783 5.0630 -0.0011 7 6 3.3036 3.6758 -0.0005 8 6 3.9887 5.0181 -0.0005 9 6 4.0567 2.5168 -0.0004 10 6 5.5616 2.5969 -0.0004 11 1 5.8826 3.4024 0.6601 12 7 6.1197 1.3233 0.4734 13 6 6.0501 2.8698 -1.3996 14 1 5.3504 2.8868 -2.2223 15 6 7.3903 3.0979 -1.6298 16 7 7.8706 3.0183 -2.8515 17 14 8.5237 3.5199 -0.2061 18 1 9.9051 3.7160 -0.7147 19 1 8.0544 4.7682 0.4470 20 1 8.5129 2.4105 0.7809 21 6 3.4312 1.2847 -0.0056 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.2127 2.3200 -0.0002 26 1 4.1539 5.3417 -1.0282 27 1 3.3610 5.7464 0.5132 28 1 4.9465 4.9373 0.5134 29 1 5.9208 0.5774 -0.1762 30 1 7.1118 1.4029 0.6398 31 1 7.2790 2.8153 -3.5929 32 1 4.0205 0.3797 -0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260667080.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = -45.149659 kcal Electronic energy + Delta-G solvation = -16885.530531 eV Core-core repulsion = 14064.138131 eV Total energy + Delta-G solvation = -2821.392400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.29322 -39.20623 -37.67495 -36.21370 -33.93326 -33.11477 -31.25896 -28.76865 -27.80331 -26.84273 -24.56132 -22.66128 -21.29225 -19.85434 -18.91331 -17.79997 -16.69457 -16.58651 -16.30023 -15.85105 -15.61758 -15.12242 -14.98307 -14.64898 -14.24495 -14.10603 -13.51019 -13.31063 -13.13417 -12.77868 -12.74761 -12.55348 -12.13296 -11.96654 -11.79182 -11.73989 -11.49573 -11.27708 -10.63031 -9.73821 -9.51489 -9.04812 -8.65632 -6.45966 0.20792 0.37609 1.06509 1.42768 1.50748 1.69157 2.34672 2.42523 2.65154 3.02217 3.75329 3.93274 4.02070 4.15256 4.23497 4.39208 4.41470 4.53309 4.60867 4.71110 4.77923 4.83124 4.98694 5.13030 5.22568 5.27457 5.60859 5.75933 5.78164 5.95838 6.37907 6.42505 6.54651 6.79220 7.34031 8.57012 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.007529 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.357425 B = 3718.221850 C = 4542.417828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.003 4.003 6 Cl -0.058 7.058 7 C -0.127 4.127 8 C -0.101 4.101 9 C -0.004 4.004 10 C 0.219 3.781 11 H 0.054 0.946 12 N -0.847 5.847 13 C -0.613 4.613 14 H 0.014 0.986 15 C -0.012 4.012 16 N -0.929 5.929 17 Si 1.079 2.921 18 H -0.290 1.290 19 H -0.262 1.262 20 H -0.239 1.239 21 C -0.149 4.149 22 H 0.062 0.938 23 H 0.124 0.876 24 H 0.067 0.933 25 H 0.160 0.840 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.331 0.669 30 H 0.332 0.668 31 H 0.252 0.748 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -1.111 8.482 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.083 3.917 4 C -0.229 4.229 5 C -0.030 4.030 6 Cl -0.029 7.029 7 C -0.128 4.128 8 C -0.157 4.157 9 C -0.005 4.005 10 C 0.109 3.891 11 H 0.072 0.928 12 N -0.378 5.378 13 C -0.652 4.652 14 H 0.032 0.968 15 C -0.212 4.212 16 N -0.564 5.564 17 Si 0.900 3.100 18 H -0.216 1.216 19 H -0.187 1.187 20 H -0.164 1.164 21 C -0.168 4.168 22 H 0.080 0.920 23 H 0.142 0.858 24 H 0.086 0.914 25 H 0.178 0.822 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.061 0.939 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.759 -0.738 9.493 15.920 hybrid contribution -1.233 -0.051 -2.109 2.443 sum -13.991 -0.788 7.384 15.840 Atomic orbital electron populations 1.23397 0.76322 1.05820 1.02298 1.86075 1.23630 1.25852 1.88734 1.18796 0.91684 0.84545 0.96719 1.21070 1.01212 0.89772 1.10895 1.20462 0.90615 0.87762 1.04184 1.98316 1.71747 1.36028 1.96840 1.19624 0.91707 0.96733 1.04736 1.20674 1.00318 0.92642 1.02084 1.19700 0.96258 0.91387 0.93137 1.18152 0.87678 0.89905 0.93382 0.92801 1.59712 1.19130 1.07242 1.51731 1.22537 0.94693 1.54371 0.93606 0.96787 1.27172 0.98771 0.92491 1.02791 1.70980 1.37951 1.46657 1.00808 0.83600 0.74288 0.79173 0.72924 1.21626 1.18678 1.16392 1.20390 0.91632 0.98703 1.06115 0.91965 0.85804 0.91417 0.82232 0.92359 0.90077 0.91674 0.85679 0.85283 0.93854 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.33 -9.65 10.50 -92.45 -0.97 -10.62 16 3 C 0.13 4.34 6.69 22.50 0.15 4.49 16 4 C -0.21 -6.42 8.82 22.39 0.20 -6.23 16 5 C 0.00 -0.12 6.31 22.31 0.14 0.02 16 6 Cl -0.06 -1.63 27.29 -2.72 -0.07 -1.70 16 7 C -0.13 -4.91 5.88 -19.83 -0.12 -5.03 16 8 C -0.10 -3.69 9.00 71.24 0.64 -3.05 16 9 C 0.00 -0.16 5.02 -19.88 -0.10 -0.26 16 10 C 0.22 9.94 1.92 43.42 0.08 10.02 16 11 H 0.05 2.43 5.09 -2.39 -0.01 2.42 16 12 N -0.85 -35.26 8.50 -174.94 -1.49 -36.75 16 13 C -0.61 -33.09 8.71 25.60 0.22 -32.87 16 14 H 0.01 0.85 7.99 -2.91 -0.02 0.83 16 15 C -0.01 -0.68 5.44 84.65 0.46 -0.22 16 16 N -0.93 -56.13 13.70 21.45 0.29 -55.83 16 17 Si 1.08 46.70 26.54 68.60 1.82 48.52 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.24 -8.96 5.53 99.48 0.55 -8.41 16 21 C -0.15 -5.88 9.21 22.37 0.21 -5.67 16 22 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 23 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.07 1.05 7.66 -2.38 -0.02 1.03 16 25 H 0.16 3.76 6.30 -2.91 -0.02 3.75 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.08 2.50 6.90 -2.38 -0.02 2.48 16 28 H 0.06 2.46 6.12 -2.39 -0.01 2.44 16 29 H 0.33 13.78 7.59 -89.69 -0.68 13.10 16 30 H 0.33 13.47 5.67 -89.69 -0.51 12.96 16 31 H 0.25 15.68 8.72 -92.71 -0.81 14.87 16 32 H 0.13 5.17 6.41 -2.91 -0.02 5.15 16 Total: -1.00 -62.76 275.47 2.37 -60.39 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.21 Total: 33.39 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 3.00 Total: -37.39 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -1.19 Total: -92.59 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.97 Total: -10.62 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.82 Total: 48.52 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -62.76 2.37 -60.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260667080.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.241 kcal (2) G-P(sol) polarization free energy of solvation -62.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds