Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47363 * 300.00446 * 3 2 1 6 6 H 1.48506 * 109.46600 * 59.99965 * 3 2 1 7 7 C 1.37878 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00028 * 186.49309 * 7 2 1 9 9 C 1.50697 * 119.99921 * 6.49776 * 7 2 1 10 10 C 1.52998 * 109.68050 * 297.98893 * 9 7 2 11 11 N 1.46908 * 109.46716 * 305.34999 * 10 9 7 12 12 C 1.53408 * 109.67921 * 58.54101 * 9 7 2 13 13 C 1.53099 * 109.42912 * 70.17397 * 12 9 7 14 14 C 1.53334 * 109.54559 * 69.96395 * 13 12 9 15 15 C 1.50933 * 108.42392 * 309.94456 * 14 13 12 16 16 O 1.33907 * 127.77972 * 196.79992 * 15 14 13 17 17 C 1.34526 * 109.41466 * 179.91458 * 16 15 14 18 18 Cl 1.73604 * 125.76579 * 180.02562 * 17 16 15 19 19 C 1.34907 * 108.46551 * 0.03952 * 17 16 15 20 20 C 1.34875 * 123.90188 * 16.77516 * 15 14 13 21 21 H 0.97000 * 119.99876 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47157 * 65.34473 * 10 9 7 23 23 H 1.08993 * 109.47241 * 185.35081 * 10 9 7 24 24 H 1.00893 * 110.99874 * 56.12269 * 11 10 9 25 25 H 1.00897 * 110.99720 * 180.02562 * 11 10 9 26 26 H 1.09002 * 109.47267 * 190.14639 * 12 9 7 27 27 H 1.08998 * 109.47800 * 310.17605 * 12 9 7 28 28 H 1.08997 * 109.44804 * 309.94338 * 13 12 9 29 29 H 1.09000 * 109.46097 * 189.98512 * 13 12 9 30 30 H 1.09002 * 109.67524 * 190.21589 * 14 13 12 31 31 H 1.08996 * 109.70657 * 69.69843 * 14 13 12 32 32 H 1.07996 * 126.68528 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0793 -1.1969 0.1063 9 6 1.2584 -2.4950 -0.1466 10 6 0.2949 -2.6722 1.0287 11 7 1.0368 -2.5574 2.2915 12 6 0.4725 -2.4937 -1.4641 13 6 1.4491 -2.5855 -2.6396 14 6 2.0816 -3.9819 -2.6733 15 6 2.6038 -4.3024 -1.2939 16 8 3.4812 -5.2535 -0.9495 17 6 3.6866 -5.2123 0.3794 18 17 4.7448 -6.2569 1.2754 19 6 2.9310 -4.2223 0.8981 20 6 2.2365 -3.6402 -0.1778 21 1 -0.4850 0.8401 -0.0004 22 1 -0.4740 -1.9006 0.9877 23 1 -0.1728 -3.6549 0.9701 24 1 1.5314 -1.6795 2.3417 25 1 0.4222 -2.6713 3.0835 26 1 -0.2028 -3.3491 -1.4852 27 1 -0.1048 -1.5725 -1.5420 28 1 2.2310 -1.8354 -2.5212 29 1 0.9131 -2.4071 -3.5718 30 1 2.9036 -3.9953 -3.3890 31 1 1.3316 -4.7182 -2.9621 32 1 2.8707 -3.9334 1.9369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260674311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = -9.238162 kcal Electronic energy + Delta-G solvation = -17634.634501 eV Core-core repulsion = 14814.799341 eV Total energy + Delta-G solvation = -2819.835160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.50844 -38.92941 -37.81476 -35.32274 -34.00470 -33.07323 -30.65360 -29.45486 -26.93308 -25.29820 -23.02641 -22.62826 -21.63336 -19.82145 -18.38430 -17.37720 -17.20412 -16.50073 -16.23804 -15.86796 -15.23764 -14.88268 -14.65236 -14.03774 -13.58354 -13.41634 -13.35926 -13.13343 -12.99861 -12.90308 -12.73338 -12.43041 -12.22594 -11.92344 -11.78361 -11.19212 -11.09366 -10.87536 -10.32256 -10.14261 -9.16487 -8.85330 -7.94526 -6.07890 0.34731 0.76762 1.41282 1.48542 1.56036 1.92515 2.50406 2.62622 3.25221 4.07242 4.19932 4.24902 4.37781 4.43398 4.60787 4.79607 4.88065 4.99071 5.08241 5.09690 5.27039 5.28830 5.38283 5.59335 5.63876 5.73536 5.83943 5.92011 6.18689 6.32914 6.51387 6.75069 6.87569 7.10892 7.56334 9.00442 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.008197 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.803699 B = 3415.015458 C = 3760.827307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.036 3.964 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.485 4.485 8 H 0.035 0.965 9 C 0.132 3.868 10 C 0.087 3.913 11 N -0.837 5.837 12 C -0.108 4.108 13 C -0.101 4.101 14 C -0.021 4.021 15 C -0.041 4.041 16 O -0.183 6.183 17 C -0.026 4.026 18 Cl 0.024 6.976 19 C -0.138 4.138 20 C -0.134 4.134 21 H 0.258 0.742 22 H 0.040 0.960 23 H 0.022 0.978 24 H 0.340 0.660 25 H 0.325 0.675 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -7.056 -1.380 7.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.163 4.163 3 Si 0.761 3.239 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.131 3.869 10 C -0.044 4.044 11 N -0.365 5.365 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.058 4.058 15 C -0.091 4.091 16 O -0.083 6.083 17 C -0.100 4.100 18 Cl 0.053 6.947 19 C -0.158 4.158 20 C -0.135 4.135 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.153 0.847 25 H 0.135 0.865 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.341 -7.853 -1.754 8.713 hybrid contribution -0.057 1.757 0.656 1.876 sum 3.284 -6.096 -1.098 7.011 Atomic orbital electron populations 1.69941 1.06205 1.26437 1.51248 1.25292 0.95285 1.00446 0.95293 0.85895 0.79090 0.81628 0.77264 1.20447 1.21084 1.21268 1.20932 0.92366 0.90430 1.48622 0.94688 1.16825 0.89570 0.88629 0.91862 1.21558 0.95854 0.96446 0.90591 1.58838 1.32287 1.41984 1.03408 1.21561 0.97398 1.00532 0.95163 1.21449 0.98948 0.94673 0.98802 1.20291 1.00134 0.98173 0.87190 1.22932 0.95393 0.91606 0.99127 1.83672 1.52515 1.49035 1.23052 1.22570 1.04270 1.01132 0.82064 1.98354 1.63156 1.65427 1.67802 1.21636 0.97036 0.95067 1.02094 1.20698 1.01761 0.99731 0.91311 0.93206 0.94151 0.95993 0.84671 0.86491 0.95083 0.91021 0.92791 0.89915 0.88915 0.88619 0.81670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.17 9.53 21.45 0.20 -44.96 16 2 C 0.04 1.78 5.07 84.66 0.43 2.21 16 3 Si 0.93 40.83 29.54 68.60 2.03 42.86 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.48 -23.93 5.74 25.60 0.15 -23.78 16 8 H 0.03 1.85 7.75 -2.91 -0.02 1.83 16 9 C 0.13 5.95 0.34 -53.56 -0.02 5.93 16 10 C 0.09 3.85 5.40 86.30 0.47 4.32 16 11 N -0.84 -33.51 7.38 -186.71 -1.38 -34.89 16 12 C -0.11 -4.59 4.54 30.76 0.14 -4.45 16 13 C -0.10 -3.65 5.86 30.74 0.18 -3.47 16 14 C -0.02 -0.67 6.30 30.03 0.19 -0.49 16 15 C -0.04 -1.62 7.22 24.99 0.18 -1.44 16 16 O -0.18 -7.12 10.65 -0.91 -0.01 -7.13 16 17 C -0.03 -0.96 7.94 67.05 0.53 -0.43 16 18 Cl 0.02 0.72 29.30 -2.72 -0.08 0.64 16 19 C -0.14 -5.66 9.93 22.10 0.22 -5.44 16 20 C -0.13 -5.76 4.66 -20.06 -0.09 -5.86 16 21 H 0.26 12.66 8.31 -92.71 -0.77 11.89 16 22 H 0.04 1.97 6.18 -2.38 -0.01 1.96 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.34 14.66 7.70 -89.70 -0.69 13.97 16 25 H 0.32 11.36 9.08 -89.70 -0.81 10.54 16 26 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 27 H 0.07 3.40 6.03 -2.39 -0.01 3.39 16 28 H 0.05 2.18 7.34 -2.39 -0.02 2.17 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.17 6.72 6.71 -2.91 -0.02 6.70 16 Total: -1.00 -52.15 270.49 2.80 -49.35 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.34 Total: 27.04 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 2.37 Total: -32.90 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.17 Total: -79.86 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.01 Total: -7.13 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -52.15 2.80 -49.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.116 kcal (2) G-P(sol) polarization free energy of solvation -52.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds