Wall clock time and date at job start Mon Mar 30 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00107 * 2 1 4 4 H 1.48497 * 109.47166 * 269.99994 * 3 2 1 5 5 H 1.48498 * 109.47188 * 30.00128 * 3 2 1 6 6 H 1.48508 * 109.47044 * 150.00195 * 3 2 1 7 7 C 1.37882 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99974 * 187.69252 * 7 2 1 9 9 C 1.50697 * 119.99629 * 7.69166 * 7 2 1 10 10 C 1.53004 * 109.68064 * 303.36606 * 9 7 2 11 11 N 1.46907 * 109.47017 * 304.71334 * 10 9 7 12 12 C 1.53402 * 109.68090 * 182.84362 * 9 7 2 13 13 C 1.53119 * 109.41291 * 289.84242 * 12 9 7 14 14 C 1.53342 * 109.53439 * 290.01250 * 13 12 9 15 15 C 1.50941 * 108.43253 * 50.03164 * 14 13 12 16 16 O 1.33903 * 127.78286 * 163.29282 * 15 14 13 17 17 C 1.34517 * 109.42035 * 180.02562 * 16 15 14 18 18 Cl 1.73596 * 125.77033 * 179.97438 * 17 16 15 19 19 C 1.34909 * 108.45913 * 359.94784 * 17 16 15 20 20 C 1.34866 * 123.89907 * 343.26644 * 15 14 13 21 21 H 0.97000 * 119.99544 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47043 * 184.71671 * 10 9 7 23 23 H 1.08995 * 109.47219 * 64.71421 * 10 9 7 24 24 H 1.00899 * 110.99512 * 66.41438 * 11 10 9 25 25 H 1.00897 * 111.00107 * 190.36765 * 11 10 9 26 26 H 1.09009 * 109.47891 * 49.82436 * 12 9 7 27 27 H 1.09007 * 109.48263 * 169.84243 * 12 9 7 28 28 H 1.08994 * 109.46013 * 50.03046 * 13 12 9 29 29 H 1.08998 * 109.46116 * 170.00869 * 13 12 9 30 30 H 1.09006 * 109.64008 * 169.71004 * 14 13 12 31 31 H 1.08996 * 109.64747 * 290.34717 * 14 13 12 32 32 H 1.08001 * 126.68115 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0773 -1.1984 0.1247 9 6 1.2612 -2.4932 -0.1758 10 6 0.1844 -2.6204 0.9038 11 7 0.8017 -2.4823 2.2297 12 6 2.2417 -3.6680 -0.0687 13 6 3.1512 -3.6858 -1.3003 14 6 2.3360 -4.0921 -2.5339 15 6 1.0917 -3.2393 -2.5857 16 8 0.2746 -3.0429 -3.6282 17 6 -0.7212 -2.2142 -3.2661 18 17 -2.0158 -1.6755 -4.2894 19 6 -0.5440 -1.8730 -1.9729 20 6 0.6203 -2.5321 -1.5386 21 1 -0.4849 0.8401 -0.0004 22 1 -0.2946 -3.5964 0.8259 23 1 -0.5615 -1.8376 0.7670 24 1 1.1615 -1.5495 2.3656 25 1 0.1498 -2.7283 2.9595 26 1 2.8485 -3.5543 0.8298 27 1 1.6841 -4.6032 -0.0147 28 1 3.5728 -2.6926 -1.4547 29 1 3.9576 -4.4027 -1.1460 30 1 2.9288 -3.9304 -3.4343 31 1 2.0571 -5.1431 -2.4589 32 1 -1.1734 -1.2207 -1.3857 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260674314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:45 Heat of formation + Delta-G solvation = 5.927534 kcal Electronic energy + Delta-G solvation = -17754.893923 eV Core-core repulsion = 14935.716396 eV Total energy + Delta-G solvation = -2819.177526 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.76535 -37.22721 -36.25698 -33.79362 -31.89001 -31.49308 -29.05674 -27.81267 -24.96738 -23.79560 -21.29479 -21.06521 -19.61242 -18.23031 -16.74944 -15.57964 -15.48260 -14.85338 -14.37219 -14.27124 -13.68340 -13.17285 -12.91648 -12.21512 -12.13422 -11.95357 -11.58004 -11.55568 -11.40911 -11.00465 -10.86871 -10.72166 -10.57675 -10.25208 -10.15934 -9.81371 -9.33602 -9.14455 -8.45565 -8.30278 -7.40406 -7.15774 -6.01019 -4.12357 1.97916 2.49282 3.25664 3.33621 3.36161 3.77127 4.28362 4.36726 5.19772 5.57867 5.68745 5.79374 5.88918 6.10636 6.20271 6.26470 6.41112 6.46828 6.70930 6.71542 6.87180 6.98472 7.10103 7.23762 7.25874 7.47366 7.64909 7.73327 7.96166 8.06960 8.31938 8.51944 8.68806 8.91765 9.50262 10.92476 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.010767 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.342777 B = 2599.949752 C = 3282.259060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.484 4.484 8 H 0.060 0.940 9 C 0.134 3.866 10 C 0.072 3.928 11 N -0.843 5.843 12 C -0.094 4.094 13 C -0.114 4.114 14 C -0.020 4.020 15 C -0.053 4.053 16 O -0.185 6.185 17 C -0.034 4.034 18 Cl -0.014 7.014 19 C -0.110 4.110 20 C -0.093 4.093 21 H 0.259 0.741 22 H 0.019 0.981 23 H 0.074 0.926 24 H 0.346 0.654 25 H 0.310 0.690 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -4.598 -2.552 5.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.522 4.522 8 H 0.079 0.921 9 C 0.134 3.866 10 C -0.058 4.058 11 N -0.370 5.370 12 C -0.132 4.132 13 C -0.151 4.151 14 C -0.057 4.057 15 C -0.102 4.102 16 O -0.085 6.085 17 C -0.109 4.109 18 Cl 0.015 6.985 19 C -0.130 4.130 20 C -0.096 4.096 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.092 0.908 24 H 0.159 0.841 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.008 -5.093 -3.171 6.000 hybrid contribution -0.604 1.974 -0.238 2.078 sum -0.612 -3.120 -3.409 4.661 Atomic orbital electron populations 1.69738 1.05787 1.26072 1.50634 1.24904 0.94807 0.98877 0.94959 0.86648 0.79998 0.83626 0.78092 1.20895 1.21460 1.19914 1.20988 0.93596 0.89538 1.48065 0.92133 1.16771 0.91033 0.93327 0.85518 1.21856 0.97344 0.97873 0.88757 1.58739 1.40620 1.34283 1.03394 1.21555 0.97573 0.97658 0.96415 1.21609 0.97325 1.01918 0.94252 1.20053 0.89716 0.96374 0.99575 1.22232 0.96261 1.06188 0.85566 1.83607 1.31729 1.54265 1.38917 1.22428 0.92091 1.04302 0.92048 1.98330 1.43020 1.87313 1.69873 1.21916 0.99489 1.00496 0.91086 1.20703 0.94413 0.95815 0.98663 0.93045 0.96289 0.90823 0.84107 0.88167 0.91404 0.94509 0.90626 0.92512 0.91442 0.91161 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.93 7.80 55.43 0.43 -21.49 16 2 C 0.07 1.62 5.03 -17.82 -0.09 1.53 16 3 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.48 -11.83 6.14 -34.44 -0.21 -12.04 16 8 H 0.06 1.51 7.41 -52.49 -0.39 1.12 16 9 C 0.13 3.03 0.34 -156.63 -0.05 2.97 16 10 C 0.07 1.60 5.18 -3.82 -0.02 1.58 16 11 N -0.84 -17.02 9.12 -10.36 -0.09 -17.11 16 12 C -0.09 -1.89 4.40 -26.46 -0.12 -2.00 16 13 C -0.11 -2.01 5.86 -26.49 -0.16 -2.17 16 14 C -0.02 -0.35 6.30 -27.59 -0.17 -0.52 16 15 C -0.05 -1.14 7.22 -35.39 -0.26 -1.40 16 16 O -0.18 -4.02 10.65 6.19 0.07 -3.95 16 17 C -0.03 -0.73 7.94 29.55 0.23 -0.50 16 18 Cl -0.01 -0.24 29.30 -51.86 -1.52 -1.76 16 19 C -0.11 -2.52 9.02 -39.85 -0.36 -2.88 16 20 C -0.09 -2.15 4.51 -104.93 -0.47 -2.62 16 21 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 22 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 23 H 0.07 1.78 5.28 -51.93 -0.27 1.51 16 24 H 0.35 7.42 8.01 -39.29 -0.31 7.11 16 25 H 0.31 5.49 9.08 -39.29 -0.36 5.14 16 26 H 0.07 1.38 8.04 -51.92 -0.42 0.97 16 27 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 28 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.17 4.15 6.14 -52.49 -0.32 3.83 16 LS Contribution 269.66 15.07 4.06 4.06 Total: -1.00 -25.18 269.66 -7.43 -32.62 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.69 Total: 10.56 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.67 Total: -18.04 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.34 Total: -38.60 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: 0.07 Total: -3.95 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.52 Total: -1.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -25.18 -7.43 -32.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.544 kcal (2) G-P(sol) polarization free energy of solvation -25.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds