Wall clock time and date at job start Mon Mar 30 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00107 * 2 1 4 4 H 1.48497 * 109.47166 * 269.99994 * 3 2 1 5 5 H 1.48498 * 109.47188 * 30.00128 * 3 2 1 6 6 H 1.48508 * 109.47044 * 150.00195 * 3 2 1 7 7 C 1.37882 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99974 * 187.69252 * 7 2 1 9 9 C 1.50697 * 119.99629 * 7.69166 * 7 2 1 10 10 C 1.53004 * 109.68064 * 303.36606 * 9 7 2 11 11 N 1.46907 * 109.47017 * 304.71334 * 10 9 7 12 12 C 1.53402 * 109.68090 * 182.84362 * 9 7 2 13 13 C 1.53119 * 109.41291 * 289.84242 * 12 9 7 14 14 C 1.53342 * 109.53439 * 290.01250 * 13 12 9 15 15 C 1.50941 * 108.43253 * 50.03164 * 14 13 12 16 16 O 1.33903 * 127.78286 * 163.29282 * 15 14 13 17 17 C 1.34517 * 109.42035 * 180.02562 * 16 15 14 18 18 Cl 1.73596 * 125.77033 * 179.97438 * 17 16 15 19 19 C 1.34909 * 108.45913 * 359.94784 * 17 16 15 20 20 C 1.34866 * 123.89907 * 343.26644 * 15 14 13 21 21 H 0.97000 * 119.99544 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47043 * 184.71671 * 10 9 7 23 23 H 1.08995 * 109.47219 * 64.71421 * 10 9 7 24 24 H 1.00899 * 110.99512 * 66.41438 * 11 10 9 25 25 H 1.00897 * 111.00107 * 190.36765 * 11 10 9 26 26 H 1.09009 * 109.47891 * 49.82436 * 12 9 7 27 27 H 1.09007 * 109.48263 * 169.84243 * 12 9 7 28 28 H 1.08994 * 109.46013 * 50.03046 * 13 12 9 29 29 H 1.08998 * 109.46116 * 170.00869 * 13 12 9 30 30 H 1.09006 * 109.64008 * 169.71004 * 14 13 12 31 31 H 1.08996 * 109.64747 * 290.34717 * 14 13 12 32 32 H 1.08001 * 126.68115 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0773 -1.1984 0.1247 9 6 1.2612 -2.4932 -0.1758 10 6 0.1844 -2.6204 0.9038 11 7 0.8017 -2.4823 2.2297 12 6 2.2417 -3.6680 -0.0687 13 6 3.1512 -3.6858 -1.3003 14 6 2.3360 -4.0921 -2.5339 15 6 1.0917 -3.2393 -2.5857 16 8 0.2746 -3.0429 -3.6282 17 6 -0.7212 -2.2142 -3.2661 18 17 -2.0158 -1.6755 -4.2894 19 6 -0.5440 -1.8730 -1.9729 20 6 0.6203 -2.5321 -1.5386 21 1 -0.4849 0.8401 -0.0004 22 1 -0.2946 -3.5964 0.8259 23 1 -0.5615 -1.8376 0.7670 24 1 1.1615 -1.5495 2.3656 25 1 0.1498 -2.7283 2.9595 26 1 2.8485 -3.5543 0.8298 27 1 1.6841 -4.6032 -0.0147 28 1 3.5728 -2.6926 -1.4547 29 1 3.9576 -4.4027 -1.1460 30 1 2.9288 -3.9304 -3.4343 31 1 2.0571 -5.1431 -2.4589 32 1 -1.1734 -1.2207 -1.3857 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260674314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:44 Heat of formation + Delta-G solvation = -8.349872 kcal Electronic energy + Delta-G solvation = -17755.513037 eV Core-core repulsion = 14935.716396 eV Total energy + Delta-G solvation = -2819.796641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.42797 -38.87251 -37.79491 -35.39511 -33.64907 -33.23308 -30.67886 -29.43687 -26.78548 -25.42880 -22.86160 -22.72977 -21.32619 -19.89297 -18.43214 -17.35074 -17.14198 -16.63993 -16.06204 -15.86136 -15.20834 -14.90029 -14.57123 -13.85167 -13.69762 -13.51602 -13.23860 -13.19554 -12.97677 -12.82165 -12.59613 -12.33631 -12.23101 -11.90845 -11.83391 -11.39042 -11.04699 -10.76421 -10.33538 -10.05532 -9.09687 -8.80747 -7.87240 -6.02949 0.38226 0.83092 1.41953 1.48384 1.52602 2.04544 2.49972 2.69500 3.30429 4.10539 4.17725 4.30528 4.41908 4.51981 4.61663 4.79432 4.92779 4.95511 5.07876 5.16474 5.28170 5.34979 5.48645 5.55972 5.61399 5.80819 5.84236 5.98350 6.16684 6.38202 6.50849 6.79699 6.91614 7.17668 7.59723 9.02109 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.010767 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.342777 B = 2599.949752 C = 3282.259060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.034 3.966 3 Si 0.930 3.070 4 H -0.294 1.294 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.487 4.487 8 H 0.051 0.949 9 C 0.129 3.871 10 C 0.080 3.920 11 N -0.836 5.836 12 C -0.091 4.091 13 C -0.108 4.108 14 C -0.019 4.019 15 C -0.053 4.053 16 O -0.186 6.186 17 C -0.039 4.039 18 Cl 0.016 6.984 19 C -0.130 4.130 20 C -0.124 4.124 21 H 0.254 0.746 22 H 0.019 0.981 23 H 0.050 0.950 24 H 0.339 0.661 25 H 0.324 0.676 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -5.686 -3.165 6.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.166 4.166 3 Si 0.759 3.241 4 H -0.222 1.222 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.128 3.872 10 C -0.052 4.052 11 N -0.363 5.363 12 C -0.129 4.129 13 C -0.145 4.145 14 C -0.056 4.056 15 C -0.102 4.102 16 O -0.086 6.086 17 C -0.113 4.113 18 Cl 0.044 6.956 19 C -0.150 4.150 20 C -0.126 4.126 21 H 0.064 0.936 22 H 0.037 0.963 23 H 0.068 0.932 24 H 0.151 0.849 25 H 0.134 0.866 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.798 -6.190 -3.772 7.293 hybrid contribution -0.914 2.311 -0.057 2.486 sum -0.115 -3.879 -3.829 5.452 Atomic orbital electron populations 1.69866 1.06164 1.25852 1.51061 1.25329 0.95337 1.00528 0.95371 0.85995 0.79350 0.81664 0.77097 1.22158 1.21632 1.19573 1.21105 0.93159 0.90632 1.47641 0.93125 1.16808 0.91402 0.93509 0.85484 1.21696 0.96932 0.96869 0.89663 1.58694 1.40844 1.33618 1.03183 1.21482 0.97336 0.96706 0.97360 1.21569 0.97758 1.01913 0.93291 1.20278 0.88056 0.96985 1.00267 1.22986 0.96778 1.05642 0.84801 1.83632 1.31785 1.54127 1.39053 1.22590 0.92584 1.03819 0.92320 1.98333 1.41449 1.86956 1.68822 1.21823 1.00038 1.01207 0.91968 1.20863 0.95128 0.97192 0.99434 0.93571 0.96290 0.93203 0.84890 0.86586 0.92187 0.93918 0.92727 0.88828 0.89197 0.88458 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.83 7.80 21.45 0.17 -44.66 16 2 C 0.03 1.68 5.03 84.66 0.43 2.11 16 3 Si 0.93 41.53 29.54 68.60 2.03 43.56 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.49 -23.77 6.14 25.60 0.16 -23.62 16 8 H 0.05 2.52 7.41 -2.91 -0.02 2.50 16 9 C 0.13 5.74 0.34 -53.56 -0.02 5.72 16 10 C 0.08 3.52 5.18 86.30 0.45 3.97 16 11 N -0.84 -33.35 9.12 -186.70 -1.70 -35.05 16 12 C -0.09 -3.49 4.40 30.77 0.14 -3.36 16 13 C -0.11 -3.53 5.86 30.75 0.18 -3.35 16 14 C -0.02 -0.60 6.30 30.04 0.19 -0.41 16 15 C -0.05 -2.16 7.22 24.99 0.18 -1.98 16 16 O -0.19 -7.79 10.65 -0.78 -0.01 -7.80 16 17 C -0.04 -1.62 7.94 67.05 0.53 -1.09 16 18 Cl 0.02 0.55 29.30 -2.72 -0.08 0.47 16 19 C -0.13 -6.01 9.02 22.10 0.20 -5.81 16 20 C -0.12 -5.63 4.51 -20.06 -0.09 -5.72 16 21 H 0.25 12.68 8.31 -92.71 -0.77 11.91 16 22 H 0.02 0.81 8.12 -2.39 -0.02 0.80 16 23 H 0.05 2.46 5.28 -2.39 -0.01 2.45 16 24 H 0.34 14.50 8.01 -89.69 -0.72 13.78 16 25 H 0.32 11.25 9.08 -89.70 -0.81 10.43 16 26 H 0.06 2.36 8.04 -2.38 -0.02 2.34 16 27 H 0.04 1.56 8.07 -2.38 -0.02 1.54 16 28 H 0.05 2.02 7.10 -2.39 -0.02 2.00 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.16 7.74 6.14 -2.91 -0.02 7.72 16 Total: -1.00 -52.85 269.66 2.37 -50.48 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: -0.37 Total: 26.53 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 2.34 Total: -33.53 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -1.54 Total: -79.72 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.01 Total: -7.80 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.08 Total: 0.47 kcal Total: -52.85 2.37 -50.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.131 kcal (2) G-P(sol) polarization free energy of solvation -52.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds