Wall clock time and date at job start Mon Mar 30 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86795 * 120.00322 * 2 1 4 4 H 1.48497 * 109.47613 * 270.00210 * 3 2 1 5 5 H 1.48498 * 109.46963 * 30.00461 * 3 2 1 6 6 H 1.48502 * 109.47162 * 150.00029 * 3 2 1 7 7 C 1.40075 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00478 * 179.97438 * 7 2 1 9 9 C 1.40043 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.38590 * 126.25449 * 359.95686 * 9 7 2 11 11 N 1.30670 * 113.54905 * 179.76810 * 10 9 7 12 12 C 1.29528 * 117.63543 * 0.51087 * 11 10 9 13 13 C 1.50693 * 124.56550 * 179.75874 * 12 11 10 14 14 H 1.08993 * 109.68040 * 165.02391 * 13 12 11 15 15 C 1.53093 * 109.57964 * 285.35136 * 13 12 11 16 16 C 1.52579 * 109.95849 * 182.82993 * 15 13 12 17 17 C 1.52584 * 110.72883 * 289.32644 * 16 15 13 18 18 C 1.53097 * 109.95633 * 70.67190 * 17 16 15 19 19 S 1.81750 * 108.84180 * 296.97701 * 18 17 16 20 20 S 1.70887 * 110.87012 * 359.50652 * 12 11 10 21 21 H 0.96999 * 119.99828 * 359.97438 * 1 2 3 22 22 H 1.08001 * 123.22206 * 0.07330 * 10 9 7 23 23 H 1.09004 * 109.38986 * 62.68137 * 15 13 12 24 24 H 1.08996 * 109.31280 * 302.92987 * 15 13 12 25 25 H 1.08998 * 109.23252 * 169.00530 * 16 15 13 26 26 H 1.08999 * 109.22876 * 49.64319 * 16 15 13 27 27 H 1.09004 * 109.38665 * 310.52905 * 17 16 15 28 28 H 1.09000 * 109.39340 * 190.82180 * 17 16 15 29 29 H 1.08997 * 109.57635 * 177.17117 * 18 17 16 30 30 H 1.08994 * 109.57677 * 56.78460 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4402 2.6525 0.7001 6 1 3.5403 1.4400 0.7000 7 6 2.0090 -1.2131 -0.0005 8 1 3.0890 -1.2132 -0.0010 9 6 1.3087 -2.4259 -0.0005 10 6 -0.0690 -2.5768 0.0008 11 7 -0.4575 -3.8244 -0.0044 12 6 0.4595 -4.7392 0.0003 13 6 0.1883 -6.2216 0.0006 14 1 1.0985 -6.7613 -0.2603 15 6 -0.2853 -6.6561 1.3901 16 6 -0.4954 -8.1671 1.4198 17 6 -1.7177 -8.5588 0.5947 18 6 -1.4258 -8.3656 -0.8957 19 16 -1.1137 -6.6027 -1.2090 20 16 2.0182 -4.0389 -0.0012 21 1 -0.4850 0.8401 0.0004 22 1 -0.7556 -1.7431 0.0009 23 1 -1.2246 -6.1555 1.6252 24 1 0.4665 -6.3807 2.1297 25 1 -0.6403 -8.4892 2.4510 26 1 0.3865 -8.6602 1.0110 27 1 -2.5634 -7.9338 0.8818 28 1 -1.9617 -9.6043 0.7831 29 1 -2.2841 -8.6942 -1.4816 30 1 -0.5470 -8.9471 -1.1741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260768421.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:57 Heat of formation + Delta-G solvation = 6.413625 kcal Electronic energy + Delta-G solvation = -14270.302576 eV Core-core repulsion = 11895.942706 eV Total energy + Delta-G solvation = -2374.359871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.72635 -36.42628 -34.27032 -31.73668 -29.26483 -27.52114 -24.76702 -23.25416 -21.65653 -20.47123 -19.16585 -17.21479 -16.59357 -15.85875 -15.02821 -14.67325 -14.08882 -13.68511 -13.42271 -13.24517 -13.06526 -12.50762 -12.06412 -11.94832 -11.54739 -11.43909 -11.39461 -11.07009 -11.00374 -10.65554 -10.52423 -10.04697 -9.79656 -9.64340 -9.13427 -8.01915 -7.93962 -7.25332 -7.05782 -7.03412 -4.64136 2.02209 2.47995 2.85969 2.91530 2.97870 3.08221 3.27650 3.63388 3.69001 4.37812 4.87291 4.96349 5.03390 5.15746 5.42224 5.50092 5.56442 5.71500 5.79645 5.90618 6.04838 6.17186 6.24689 6.35596 6.62389 6.66231 7.07458 7.34718 7.71317 8.06745 8.27926 8.60705 9.75550 9.78179 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.052213 B = 0.005265 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.131826 B = 5317.037699 C = 5475.180338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.064 3.936 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.369 4.369 8 H 0.089 0.911 9 C 0.019 3.981 10 C -0.137 4.137 11 N -0.399 5.399 12 C -0.130 4.130 13 C 0.078 3.922 14 H 0.078 0.922 15 C -0.110 4.110 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.099 4.099 19 S -0.239 6.239 20 S -0.052 6.052 21 H 0.291 0.709 22 H 0.197 0.803 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -7.947 1.568 8.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.160 4.160 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.406 4.406 8 H 0.107 0.893 9 C -0.103 4.103 10 C -0.293 4.293 11 N -0.110 5.110 12 C -0.398 4.398 13 C -0.054 4.054 14 H 0.096 0.904 15 C -0.150 4.150 16 C -0.165 4.165 17 C -0.157 4.157 18 C -0.248 4.248 19 S -0.011 6.011 20 S 0.197 5.803 21 H 0.103 0.897 22 H 0.213 0.787 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.014 -7.907 0.780 7.945 hybrid contribution 0.410 0.587 0.791 1.067 sum 0.424 -7.320 1.570 7.498 Atomic orbital electron populations 1.69475 1.07880 1.30023 1.30998 1.26171 0.95136 1.01966 0.92721 0.85823 0.80037 0.78492 0.79744 1.18815 1.19536 1.18098 1.19102 0.95110 0.88750 1.37660 0.89316 1.23386 0.95778 0.93080 0.98033 1.23153 0.93452 0.91961 1.20725 1.65349 1.36530 1.01383 1.07762 1.24010 0.90454 0.95581 1.29727 1.21064 0.96552 0.92911 0.94835 0.90398 1.21809 1.02815 0.94333 0.96065 1.21556 0.97962 0.96748 1.00243 1.21679 0.99088 1.01343 0.93601 1.23459 1.04264 0.97724 0.99361 1.87428 1.53395 1.08627 1.51673 1.82929 1.14177 1.03619 1.79550 0.89711 0.78707 0.90368 0.91228 0.91547 0.92221 0.90694 0.91746 0.88583 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.32 10.18 55.56 0.57 -17.76 16 2 C 0.06 1.48 5.50 -17.28 -0.09 1.38 16 3 Si 0.94 17.01 29.56 -169.99 -5.03 11.98 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 7 C -0.37 -9.22 9.42 -38.22 -0.36 -9.58 16 8 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.02 0.52 6.30 -38.78 -0.24 0.27 16 10 C -0.14 -3.79 10.55 -17.92 -0.19 -3.98 16 11 N -0.40 -10.68 10.19 -10.84 -0.11 -10.80 16 12 C -0.13 -3.14 6.05 -13.25 -0.08 -3.22 16 13 C 0.08 1.56 3.00 -27.84 -0.08 1.47 16 14 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.11 -1.89 5.02 -26.90 -0.14 -2.02 16 16 C -0.13 -1.69 5.61 -27.16 -0.15 -1.84 16 17 C -0.12 -1.49 5.75 -26.89 -0.15 -1.64 16 18 C -0.10 -1.37 6.46 37.21 0.24 -1.13 16 19 S -0.24 -4.61 21.47 -107.50 -2.31 -6.92 16 20 S -0.05 -1.25 23.13 -107.50 -2.49 -3.73 16 21 H 0.29 6.22 8.30 -40.82 -0.34 5.89 16 22 H 0.20 5.56 5.36 -52.49 -0.28 5.27 16 23 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 27 H 0.07 1.01 8.06 -51.93 -0.42 0.60 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -27.69 274.05 -10.11 -37.80 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -3.62 Total: 5.58 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -1.25 Total: -20.29 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: 0.46 Total: -28.55 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -4.79 Total: -10.65 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.69 -10.11 -37.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260768421.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.213 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds