Wall clock time and date at job start Mon Mar 30 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99595 * 2 1 4 4 H 1.48497 * 109.47431 * 270.00201 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.47037 * 149.99996 * 3 2 1 7 7 C 1.40064 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00527 * 179.97438 * 7 2 1 9 9 C 1.40047 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.38586 * 126.25012 * 359.95893 * 9 7 2 11 11 N 1.30678 * 113.54695 * 179.76671 * 10 9 7 12 12 C 1.29524 * 117.63049 * 0.51953 * 11 10 9 13 13 C 1.50701 * 124.55926 * 179.76163 * 12 11 10 14 14 C 1.52997 * 109.47212 * 89.69726 * 13 12 11 15 15 H 1.09003 * 110.36110 * 304.12993 * 14 13 12 16 16 C 1.54274 * 110.40477 * 181.68017 * 14 13 12 17 17 C 1.53851 * 108.92779 * 213.25410 * 16 14 13 18 18 C 1.55142 * 106.90025 * 47.25440 * 17 16 14 19 19 S 1.83098 * 110.40238 * 66.44989 * 14 13 12 20 20 S 1.70880 * 110.87658 * 359.49585 * 12 11 10 21 21 H 0.96999 * 120.00275 * 0.02562 * 1 2 3 22 22 H 1.08000 * 123.22838 * 359.97438 * 10 9 7 23 23 H 1.09002 * 109.47060 * 209.69781 * 13 12 11 24 24 H 1.09001 * 109.47380 * 329.69869 * 13 12 11 25 25 H 1.08999 * 109.60820 * 333.17342 * 16 14 13 26 26 H 1.08999 * 109.60825 * 93.33240 * 16 14 13 27 27 H 1.09001 * 109.97780 * 287.89546 * 17 16 14 28 28 H 1.09003 * 109.97663 * 166.61306 * 17 16 14 29 29 H 1.08996 * 110.85578 * 199.70210 * 18 17 16 30 30 H 1.09004 * 110.85202 * 76.05795 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4899 2.0466 -1.4000 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0090 -1.2129 -0.0005 8 1 3.0890 -1.2129 -0.0010 9 6 1.3089 -2.4258 -0.0005 10 6 -0.0687 -2.5768 0.0008 11 7 -0.4572 -3.8245 -0.0045 12 6 0.4599 -4.7392 0.0004 13 6 0.1888 -6.2216 0.0007 14 6 0.0957 -6.7234 -1.4416 15 1 -0.6624 -6.1638 -1.9896 16 6 -0.2235 -8.2325 -1.4666 17 6 0.4686 -8.8690 -2.6843 18 6 1.9319 -8.3536 -2.6918 19 16 1.7204 -6.5799 -2.2735 20 16 2.0186 -4.0387 -0.0011 21 1 -0.4850 0.8400 -0.0004 22 1 -0.7554 -1.7433 0.0023 23 1 0.9994 -6.7391 0.5139 24 1 -0.7516 -6.4189 0.5154 25 1 0.1431 -8.6991 -0.5522 26 1 -1.3012 -8.3773 -1.5412 27 1 -0.0375 -8.5659 -3.6009 28 1 0.4569 -9.9551 -2.5938 29 1 2.3789 -8.4689 -3.6792 30 1 2.5266 -8.8629 -1.9335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260791921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:53 Heat of formation + Delta-G solvation = 7.665193 kcal Electronic energy + Delta-G solvation = -14171.142313 eV Core-core repulsion = 11796.836714 eV Total energy + Delta-G solvation = -2374.305599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.57625 -36.23593 -34.17429 -32.03489 -29.15664 -27.12769 -24.62344 -23.22673 -21.57769 -20.59648 -19.02501 -16.80502 -16.55763 -16.06201 -15.44063 -14.81430 -14.11559 -13.70543 -13.45713 -12.85449 -12.75029 -12.56417 -11.97887 -11.71368 -11.52634 -11.40175 -11.29873 -11.24394 -10.84328 -10.78998 -10.56740 -10.29824 -9.70023 -9.50750 -9.33468 -7.90871 -7.86766 -7.23288 -7.05962 -6.91817 -4.52332 2.17978 2.46287 2.80102 2.92866 2.97564 3.05823 3.32629 3.72276 3.80525 4.41600 4.69262 4.78633 4.99459 5.11203 5.30173 5.33796 5.60822 5.66813 5.79051 5.83852 5.92748 6.02709 6.11652 6.44356 6.48754 6.75125 7.20946 7.48207 7.84821 8.20065 8.41529 8.70460 9.86099 9.88358 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.046947 B = 0.005376 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.271190 B = 5207.511528 C = 5489.356088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.064 3.936 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.376 4.376 8 H 0.086 0.914 9 C 0.007 3.993 10 C -0.141 4.141 11 N -0.427 5.427 12 C -0.136 4.136 13 C 0.010 3.990 14 C -0.031 4.031 15 H 0.098 0.902 16 C -0.127 4.127 17 C -0.125 4.125 18 C -0.093 4.093 19 S -0.259 6.259 20 S -0.027 6.027 21 H 0.288 0.712 22 H 0.194 0.806 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 -9.982 -2.802 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.158 4.158 3 Si 0.757 3.243 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.413 4.413 8 H 0.104 0.896 9 C -0.115 4.115 10 C -0.295 4.295 11 N -0.139 5.139 12 C -0.404 4.404 13 C -0.032 4.032 14 C -0.161 4.161 15 H 0.116 0.884 16 C -0.166 4.166 17 C -0.164 4.164 18 C -0.242 4.242 19 S -0.033 6.033 20 S 0.223 5.777 21 H 0.100 0.900 22 H 0.210 0.790 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.288 -9.610 -3.009 10.327 hybrid contribution -0.974 0.501 0.146 1.105 sum 1.314 -9.109 -2.863 9.638 Atomic orbital electron populations 1.69480 1.07828 1.29643 1.32303 1.26121 0.95081 1.01807 0.92802 0.85872 0.80064 0.78766 0.79626 1.18939 1.19676 1.18172 1.19030 0.94942 0.88819 1.38505 0.89567 1.23426 0.95937 0.93827 0.98289 1.23084 0.93653 0.91883 1.20867 1.65411 1.37098 1.01755 1.09622 1.24787 0.90634 0.97355 1.27632 1.19660 1.01245 0.89758 0.92557 1.23916 0.95211 0.97094 0.99891 0.88399 1.22439 1.01674 0.93644 0.98875 1.22529 0.93903 1.00726 0.99216 1.24272 0.99172 0.96341 1.04414 1.88233 1.29103 1.10200 1.75724 1.83077 1.14218 1.02359 1.77999 0.90023 0.78974 0.91468 0.90700 0.90761 0.90235 0.90682 0.90538 0.88722 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.19 10.18 55.56 0.57 -18.63 16 2 C 0.06 1.56 5.50 -17.28 -0.10 1.46 16 3 Si 0.93 17.78 29.56 -169.99 -5.03 12.76 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 7 C -0.38 -9.83 9.42 -38.22 -0.36 -10.19 16 8 H 0.09 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.01 0.20 6.30 -38.78 -0.24 -0.05 16 10 C -0.14 -4.00 10.55 -17.91 -0.19 -4.19 16 11 N -0.43 -11.58 10.48 -10.84 -0.11 -11.69 16 12 C -0.14 -3.30 6.22 -13.25 -0.08 -3.39 16 13 C 0.01 0.20 5.19 -27.88 -0.14 0.05 16 14 C -0.03 -0.53 3.26 -26.07 -0.09 -0.62 16 15 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 16 C -0.13 -1.56 5.94 -25.62 -0.15 -1.72 16 17 C -0.13 -1.35 6.46 -25.15 -0.16 -1.51 16 18 C -0.09 -1.15 7.38 38.29 0.28 -0.86 16 19 S -0.26 -4.58 21.45 -107.50 -2.31 -6.89 16 20 S -0.03 -0.67 22.29 -107.50 -2.40 -3.06 16 21 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 22 H 0.19 5.61 5.36 -52.49 -0.28 5.33 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -29.13 276.01 -9.97 -39.09 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.62 Total: 5.25 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -1.23 Total: -21.00 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.45 Total: -30.32 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -4.70 Total: -9.95 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.13 -9.97 -39.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.759 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds