Wall clock time and date at job start Mon Mar 30 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99595 * 2 1 4 4 H 1.48497 * 109.47431 * 270.00201 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.47037 * 149.99996 * 3 2 1 7 7 C 1.40064 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00527 * 179.97438 * 7 2 1 9 9 C 1.40047 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.38586 * 126.25012 * 359.95893 * 9 7 2 11 11 N 1.30678 * 113.54695 * 179.76671 * 10 9 7 12 12 C 1.29524 * 117.63049 * 0.51953 * 11 10 9 13 13 C 1.50701 * 124.55926 * 179.76163 * 12 11 10 14 14 C 1.52997 * 109.47212 * 89.69726 * 13 12 11 15 15 H 1.09003 * 110.36110 * 304.12993 * 14 13 12 16 16 C 1.54274 * 110.40477 * 181.68017 * 14 13 12 17 17 C 1.53851 * 108.92779 * 213.25410 * 16 14 13 18 18 C 1.55142 * 106.90025 * 47.25440 * 17 16 14 19 19 S 1.83098 * 110.40238 * 66.44989 * 14 13 12 20 20 S 1.70880 * 110.87658 * 359.49585 * 12 11 10 21 21 H 0.96999 * 120.00275 * 0.02562 * 1 2 3 22 22 H 1.08000 * 123.22838 * 359.97438 * 10 9 7 23 23 H 1.09002 * 109.47060 * 209.69781 * 13 12 11 24 24 H 1.09001 * 109.47380 * 329.69869 * 13 12 11 25 25 H 1.08999 * 109.60820 * 333.17342 * 16 14 13 26 26 H 1.08999 * 109.60825 * 93.33240 * 16 14 13 27 27 H 1.09001 * 109.97780 * 287.89546 * 17 16 14 28 28 H 1.09003 * 109.97663 * 166.61306 * 17 16 14 29 29 H 1.08996 * 110.85578 * 199.70210 * 18 17 16 30 30 H 1.09004 * 110.85202 * 76.05795 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4899 2.0466 -1.4000 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0090 -1.2129 -0.0005 8 1 3.0890 -1.2129 -0.0010 9 6 1.3089 -2.4258 -0.0005 10 6 -0.0687 -2.5768 0.0008 11 7 -0.4572 -3.8245 -0.0045 12 6 0.4599 -4.7392 0.0004 13 6 0.1888 -6.2216 0.0007 14 6 0.0957 -6.7234 -1.4416 15 1 -0.6624 -6.1638 -1.9896 16 6 -0.2235 -8.2325 -1.4666 17 6 0.4686 -8.8690 -2.6843 18 6 1.9319 -8.3536 -2.6918 19 16 1.7204 -6.5799 -2.2735 20 16 2.0186 -4.0387 -0.0011 21 1 -0.4850 0.8400 -0.0004 22 1 -0.7554 -1.7433 0.0023 23 1 0.9994 -6.7391 0.5139 24 1 -0.7516 -6.4189 0.5154 25 1 0.1431 -8.6991 -0.5522 26 1 -1.3012 -8.3773 -1.5412 27 1 -0.0375 -8.5659 -3.6009 28 1 0.4569 -9.9551 -2.5938 29 1 2.3789 -8.4689 -3.6792 30 1 2.5266 -8.8629 -1.9335 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260791921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:52 Heat of formation + Delta-G solvation = -9.016368 kcal Electronic energy + Delta-G solvation = -14171.865679 eV Core-core repulsion = 11796.836714 eV Total energy + Delta-G solvation = -2375.028965 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53145 -37.42133 -36.01726 -33.45819 -31.02533 -28.51319 -26.26856 -24.83983 -23.26804 -21.64259 -20.97455 -18.64771 -18.41126 -17.49238 -16.66863 -16.39678 -15.61855 -15.16540 -14.84478 -14.48669 -14.38127 -13.95717 -13.56043 -13.29819 -13.17905 -13.04441 -12.85261 -12.32547 -12.20567 -12.03100 -11.87250 -11.70904 -11.50771 -11.45338 -10.63470 -9.91337 -9.88783 -9.07771 -8.77674 -8.59650 -6.53142 0.56949 0.96253 1.25847 1.40367 1.50573 1.56149 1.64683 1.78517 2.13888 2.49827 3.09359 3.62203 3.82420 3.94534 4.13781 4.21935 4.33185 4.45382 4.69638 4.76612 4.80881 4.91911 4.96227 5.01277 5.02676 5.22498 5.27036 5.52356 5.83496 6.22828 6.44832 6.60353 7.81866 8.08003 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.046947 B = 0.005376 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.271190 B = 5207.511528 C = 5489.356088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.023 3.977 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.404 4.404 8 H 0.094 0.906 9 C -0.026 4.026 10 C -0.183 4.183 11 N -0.453 5.453 12 C -0.120 4.120 13 C 0.009 3.991 14 C -0.018 4.018 15 H 0.071 0.929 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.068 4.068 19 S -0.353 6.353 20 S -0.012 6.012 21 H 0.299 0.701 22 H 0.178 0.822 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 -11.527 -3.026 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.196 4.196 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.174 1.174 7 C -0.441 4.441 8 H 0.112 0.888 9 C -0.148 4.148 10 C -0.334 4.334 11 N -0.166 5.166 12 C -0.391 4.391 13 C -0.033 4.033 14 C -0.148 4.148 15 H 0.090 0.910 16 C -0.159 4.159 17 C -0.156 4.156 18 C -0.216 4.216 19 S -0.128 6.128 20 S 0.239 5.761 21 H 0.111 0.889 22 H 0.194 0.806 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.001 -11.157 -3.235 11.998 hybrid contribution -1.208 0.838 0.190 1.483 sum 1.792 -10.319 -3.044 10.907 Atomic orbital electron populations 1.69533 1.09516 1.31364 1.31679 1.27245 0.95861 1.05208 0.91329 0.84724 0.78693 0.73458 0.80005 1.18162 1.18301 1.17418 1.19436 0.95518 0.89569 1.39544 0.88823 1.23781 0.96238 0.95697 0.99110 1.22943 0.94160 0.92279 1.24062 1.65419 1.38062 1.01838 1.11273 1.25759 0.90101 0.99354 1.23890 1.19859 1.02365 0.86353 0.94751 1.23753 0.93468 1.00289 0.97257 0.91049 1.22457 1.03137 0.89840 1.00503 1.22538 0.92159 1.02608 0.98331 1.24397 1.00867 0.90827 1.05534 1.88490 1.30543 1.17110 1.76612 1.82866 1.14328 1.00891 1.78017 0.88863 0.80551 0.89942 0.89434 0.89239 0.88434 0.90774 0.86802 0.87209 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.96 10.18 21.85 0.22 -40.74 16 2 C 0.02 1.13 5.50 85.28 0.47 1.60 16 3 Si 1.01 36.02 29.56 68.60 2.03 38.05 16 4 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 5 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 6 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 7 C -0.40 -21.73 9.42 23.15 0.22 -21.51 16 8 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 9 C -0.03 -1.52 6.30 22.79 0.14 -1.38 16 10 C -0.18 -10.92 10.55 84.95 0.90 -10.02 16 11 N -0.45 -25.52 10.48 -188.21 -1.97 -27.49 16 12 C -0.12 -5.95 6.22 88.45 0.55 -5.40 16 13 C 0.01 0.34 5.19 29.85 0.15 0.50 16 14 C -0.02 -0.59 3.26 31.03 0.10 -0.49 16 15 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 16 C -0.12 -2.55 5.94 31.31 0.19 -2.36 16 17 C -0.12 -2.04 6.46 31.62 0.20 -1.84 16 18 C -0.07 -1.46 7.38 72.72 0.54 -0.92 16 19 S -0.35 -12.30 21.45 -56.49 -1.21 -13.52 16 20 S -0.01 -0.59 22.29 -56.49 -1.26 -1.85 16 21 H 0.30 13.54 8.30 -92.71 -0.77 12.77 16 22 H 0.18 10.95 5.36 -2.91 -0.02 10.93 16 23 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 24 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 25 H 0.09 1.66 7.86 -2.39 -0.02 1.64 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -66.93 276.01 2.41 -64.52 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 1.14 Total: 22.85 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.46 Total: -41.82 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.75 Total: -68.23 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 16 Polarization: -12.89 SS G_CDS: -2.47 Total: -15.37 kcal Total: -66.93 2.41 -64.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.503 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds