Wall clock time and date at job start Mon Mar 30 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00062 * 2 1 4 4 H 1.48494 * 109.47021 * 270.00123 * 3 2 1 5 5 H 1.48502 * 109.46967 * 30.00152 * 3 2 1 6 6 H 1.48503 * 109.46949 * 149.99986 * 3 2 1 7 7 C 1.37879 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.33644 * 126.03938 * 90.02357 * 10 9 7 12 12 N 1.31771 * 114.50041 * 180.02562 * 11 10 9 13 13 C 1.29028 * 117.12878 * 359.97438 * 12 11 10 14 14 C 1.50701 * 124.91855 * 180.02562 * 13 12 11 15 15 H 1.09002 * 110.75800 * 167.04205 * 14 13 12 16 16 C 1.55134 * 110.85609 * 290.76183 * 14 13 12 17 17 C 1.53858 * 106.89599 * 160.29410 * 16 14 13 18 18 C 1.54272 * 108.92999 * 312.74261 * 17 16 14 19 19 S 1.83099 * 104.64725 * 27.95652 * 18 17 16 20 20 S 1.70979 * 110.16576 * 359.97438 * 13 12 11 21 21 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47804 * 59.99542 * 9 7 2 23 23 H 1.09002 * 109.46497 * 299.99234 * 9 7 2 24 24 H 1.08002 * 122.74545 * 359.72316 * 11 10 9 25 25 H 1.08995 * 109.97794 * 279.65494 * 16 14 13 26 26 H 1.09002 * 109.97446 * 40.93810 * 16 14 13 27 27 H 1.09002 * 109.60616 * 192.82514 * 17 16 14 28 28 H 1.08998 * 109.61189 * 72.66995 * 17 16 14 29 29 H 1.08990 * 110.40655 * 269.16572 * 18 17 16 30 30 H 1.08996 * 110.49962 * 146.79056 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.7410 -4.2425 1.0812 12 7 3.5805 -5.2234 0.8176 13 6 3.8062 -5.4867 -0.4252 14 6 4.7304 -6.5674 -0.9240 15 1 4.5803 -6.7429 -1.9893 16 6 6.2099 -6.2120 -0.6214 17 6 7.0084 -7.5253 -0.6901 18 6 6.2621 -8.6076 0.1172 19 16 4.5003 -8.1163 0.0319 20 16 2.9036 -4.4328 -1.4243 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5572 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.4900 -3.9429 2.0880 25 1 6.5839 -5.5094 -1.3661 26 1 6.2922 -5.7779 0.3751 27 1 8.0010 -7.3725 -0.2665 28 1 7.1017 -7.8428 -1.7287 29 1 6.6050 -8.6142 1.1517 30 1 6.4052 -9.5885 -0.3361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260818538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:00 Heat of formation + Delta-G solvation = 24.656761 kcal Electronic energy + Delta-G solvation = -13943.809924 eV Core-core repulsion = 11570.241136 eV Total energy + Delta-G solvation = -2373.568789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11137 -36.23518 -33.67200 -31.70851 -29.91470 -26.78289 -25.37977 -23.53722 -22.31362 -21.10746 -18.83857 -17.59722 -16.47021 -16.26473 -15.65791 -14.74220 -14.48711 -14.35262 -13.77602 -13.54225 -12.84578 -12.68724 -12.38551 -11.95423 -11.82103 -11.72516 -11.54209 -11.04599 -10.97748 -10.84702 -10.36801 -10.09080 -9.90246 -9.66991 -9.00887 -8.56132 -8.52196 -8.02641 -7.56276 -6.16679 -4.22381 1.17880 1.68225 2.13613 2.36008 2.49584 3.24225 3.30731 3.34486 3.53966 4.32455 4.35088 4.44160 4.61154 4.80213 4.93071 5.01428 5.18714 5.43600 5.44416 5.56391 5.70101 5.76571 5.99806 6.16445 6.27052 6.87952 7.30320 7.37917 7.77153 8.10625 8.34766 8.80994 9.42525 10.92875 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.044726 B = 0.004766 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.887488 B = 5873.882320 C = 6119.200392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.081 3.919 10 C -0.125 4.125 11 C -0.012 4.012 12 N -0.437 5.437 13 C 0.001 3.999 14 C 0.047 3.953 15 H 0.110 0.890 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.082 4.082 19 S -0.252 6.252 20 S 0.103 5.897 21 H 0.265 0.735 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.172 0.828 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.522 -13.397 -3.050 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.247 4.247 11 C -0.160 4.160 12 N -0.151 5.151 13 C -0.277 4.277 14 C -0.085 4.085 15 H 0.128 0.872 16 C -0.160 4.160 17 C -0.165 4.165 18 C -0.230 4.230 19 S -0.026 6.026 20 S 0.356 5.644 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.189 0.811 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.562 -14.053 -3.268 17.880 hybrid contribution 1.168 1.777 0.466 2.177 sum 11.730 -12.276 -2.802 17.208 Atomic orbital electron populations 1.69945 1.06055 1.27199 1.49745 1.24995 0.94924 0.99354 0.94772 0.86471 0.79828 0.82780 0.78296 1.20437 1.20979 1.19712 1.21010 0.93093 0.89411 1.52155 0.92291 1.17972 0.91280 0.87413 0.99190 1.26952 1.03271 1.01881 0.92549 1.21575 0.98769 0.95247 1.00434 1.66066 1.15027 1.15732 1.18304 1.25690 1.05952 1.03447 0.92641 1.22298 0.95144 0.90748 1.00267 0.87238 1.22692 0.90809 0.98016 1.04487 1.22276 0.99878 0.93410 1.00900 1.24010 0.93653 1.01380 1.03976 1.87824 1.11794 1.27780 1.75207 1.83795 1.39657 1.27789 1.13177 0.92559 0.94665 0.93496 0.81084 0.89498 0.89363 0.89821 0.90634 0.89027 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.08 9.09 -34.44 -0.31 -14.40 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.08 2.03 5.51 -29.04 -0.16 1.87 16 10 C -0.12 -2.70 5.79 -35.92 -0.21 -2.91 16 11 C -0.01 -0.24 11.25 -19.19 -0.22 -0.46 16 12 N -0.44 -8.52 10.32 -11.86 -0.12 -8.65 16 13 C 0.00 0.02 6.19 -13.46 -0.08 -0.07 16 14 C 0.05 0.65 3.72 -26.75 -0.10 0.55 16 15 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.12 -1.35 5.88 -25.16 -0.15 -1.50 16 17 C -0.13 -1.07 6.39 -25.62 -0.16 -1.23 16 18 C -0.08 -0.78 7.34 37.82 0.28 -0.51 16 19 S -0.25 -3.54 22.55 -107.50 -2.42 -5.96 16 20 S 0.10 1.88 23.18 -107.50 -2.49 -0.61 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.17 3.32 8.06 -52.49 -0.42 2.90 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 284.12 15.07 4.28 4.28 Total: -1.00 -29.56 284.12 -10.02 -39.58 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.76 Total: -2.78 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.21 Total: -17.06 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.61 Total: -33.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -4.92 Total: -6.57 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.56 -10.02 -39.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.237 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds