Wall clock time and date at job start Mon Mar 30 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00062 * 2 1 4 4 H 1.48494 * 109.47021 * 270.00123 * 3 2 1 5 5 H 1.48502 * 109.46967 * 30.00152 * 3 2 1 6 6 H 1.48503 * 109.46949 * 149.99986 * 3 2 1 7 7 C 1.37879 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.33644 * 126.03938 * 90.02357 * 10 9 7 12 12 N 1.31771 * 114.50041 * 180.02562 * 11 10 9 13 13 C 1.29028 * 117.12878 * 359.97438 * 12 11 10 14 14 C 1.50701 * 124.91855 * 180.02562 * 13 12 11 15 15 H 1.09002 * 110.75800 * 167.04205 * 14 13 12 16 16 C 1.55134 * 110.85609 * 290.76183 * 14 13 12 17 17 C 1.53858 * 106.89599 * 160.29410 * 16 14 13 18 18 C 1.54272 * 108.92999 * 312.74261 * 17 16 14 19 19 S 1.83099 * 104.64725 * 27.95652 * 18 17 16 20 20 S 1.70979 * 110.16576 * 359.97438 * 13 12 11 21 21 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47804 * 59.99542 * 9 7 2 23 23 H 1.09002 * 109.46497 * 299.99234 * 9 7 2 24 24 H 1.08002 * 122.74545 * 359.72316 * 11 10 9 25 25 H 1.08995 * 109.97794 * 279.65494 * 16 14 13 26 26 H 1.09002 * 109.97446 * 40.93810 * 16 14 13 27 27 H 1.09002 * 109.60616 * 192.82514 * 17 16 14 28 28 H 1.08998 * 109.61189 * 72.66995 * 17 16 14 29 29 H 1.08990 * 110.40655 * 269.16572 * 18 17 16 30 30 H 1.08996 * 110.49962 * 146.79056 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.7410 -4.2425 1.0812 12 7 3.5805 -5.2234 0.8176 13 6 3.8062 -5.4867 -0.4252 14 6 4.7304 -6.5674 -0.9240 15 1 4.5803 -6.7429 -1.9893 16 6 6.2099 -6.2120 -0.6214 17 6 7.0084 -7.5253 -0.6901 18 6 6.2621 -8.6076 0.1172 19 16 4.5003 -8.1163 0.0319 20 16 2.9036 -4.4328 -1.4243 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5572 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.4900 -3.9429 2.0880 25 1 6.5839 -5.5094 -1.3661 26 1 6.2922 -5.7779 0.3751 27 1 8.0010 -7.3725 -0.2665 28 1 7.1017 -7.8428 -1.7287 29 1 6.6050 -8.6142 1.1517 30 1 6.4052 -9.5885 -0.3361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260818538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:00 Heat of formation + Delta-G solvation = 8.157331 kcal Electronic energy + Delta-G solvation = -13944.525393 eV Core-core repulsion = 11570.241136 eV Total energy + Delta-G solvation = -2374.284258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63619 -37.16532 -35.61035 -33.29584 -31.32369 -28.30586 -26.73784 -25.03303 -23.97220 -22.01576 -20.28226 -19.06976 -18.57089 -17.41020 -16.74085 -16.55581 -15.73433 -15.56679 -15.07027 -14.74463 -14.42255 -14.09107 -13.93976 -13.68501 -13.10634 -12.79531 -12.71421 -12.56574 -12.46898 -12.11711 -11.94390 -11.78660 -11.67952 -10.92239 -10.67942 -10.48437 -10.08235 -9.62504 -8.65481 -8.25872 -6.40090 -0.25735 0.28302 0.80502 1.04326 1.39892 1.40562 1.43877 1.52051 1.99149 2.38589 3.05410 3.06662 3.57219 3.75533 3.93479 4.05375 4.25388 4.34820 4.40325 4.56848 4.68275 4.75890 4.92371 4.98675 5.17643 5.20082 5.30058 5.37839 5.65013 6.03775 6.68974 6.81959 7.29188 8.83608 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.044726 B = 0.004766 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.887488 B = 5873.882320 C = 6119.200392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.093 3.907 10 C -0.172 4.172 11 C -0.004 4.004 12 N -0.459 5.459 13 C 0.024 3.976 14 C 0.046 3.954 15 H 0.132 0.868 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.064 4.064 19 S -0.319 6.319 20 S 0.138 5.862 21 H 0.268 0.732 22 H 0.013 0.987 23 H 0.023 0.977 24 H 0.173 0.827 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.293 -14.201 -4.035 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.054 3.946 10 C -0.294 4.294 11 C -0.153 4.153 12 N -0.173 5.173 13 C -0.255 4.255 14 C -0.086 4.086 15 H 0.150 0.850 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.212 4.212 19 S -0.093 6.093 20 S 0.392 5.608 21 H 0.077 0.923 22 H 0.032 0.968 23 H 0.041 0.959 24 H 0.190 0.810 25 H 0.122 0.878 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.330 -14.858 -4.258 20.410 hybrid contribution 0.377 1.864 0.763 2.049 sum 13.707 -12.994 -3.495 19.208 Atomic orbital electron populations 1.70058 1.07604 1.28273 1.50573 1.25872 0.95749 1.02982 0.94193 0.85424 0.78553 0.78298 0.78690 1.19464 1.20381 1.19149 1.21295 0.93069 0.90741 1.52056 0.92658 1.17578 0.91459 0.88545 0.97028 1.26548 1.05000 1.02869 0.94975 1.21661 0.98248 0.94997 1.00409 1.66162 1.15830 1.15988 1.19351 1.26513 1.04301 1.02734 0.91967 1.22578 0.95861 0.89090 1.01075 0.84991 1.22724 0.89319 1.00073 1.03705 1.22282 0.99967 0.91089 1.02232 1.24166 0.89327 1.02825 1.04900 1.88063 1.17187 1.28242 1.75805 1.83536 1.39011 1.27045 1.11247 0.92288 0.96833 0.95856 0.81046 0.87789 0.91551 0.87482 0.88478 0.88628 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 2 C 0.01 0.62 5.46 84.65 0.46 1.09 16 3 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -29.71 9.09 25.60 0.23 -29.47 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.09 4.89 5.51 29.10 0.16 5.05 16 10 C -0.17 -7.67 5.79 24.64 0.14 -7.53 16 11 C 0.00 -0.18 11.25 83.66 0.94 0.76 16 12 N -0.46 -17.83 10.32 -191.44 -1.98 -19.81 16 13 C 0.02 0.80 6.19 88.52 0.55 1.35 16 14 C 0.05 1.14 3.72 30.58 0.11 1.26 16 15 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 16 C -0.12 -2.30 5.88 31.61 0.19 -2.11 16 17 C -0.12 -1.47 6.39 31.31 0.20 -1.27 16 18 C -0.06 -1.01 7.34 72.41 0.53 -0.48 16 19 S -0.32 -8.40 22.55 -56.49 -1.27 -9.68 16 20 S 0.14 4.96 23.18 -56.49 -1.31 3.65 16 21 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 22 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.17 6.95 8.06 -2.91 -0.02 6.92 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.14 284.12 2.40 -62.74 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.13 Total: 3.20 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.52 Total: -31.34 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.69 Total: -73.80 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.58 Total: -6.03 kcal Total: -65.14 2.40 -62.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.894 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds