Wall clock time and date at job start Mon Mar 30 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48495 * 109.46622 * 240.00083 * 3 2 1 5 5 H 1.48497 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47196 * 120.00056 * 3 2 1 7 7 C 1.37871 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.50709 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.33634 * 126.03535 * 90.02778 * 10 9 7 12 12 N 1.31781 * 114.50388 * 179.97438 * 11 10 9 13 13 C 1.29033 * 117.11833 * 359.97438 * 12 11 10 14 14 C 1.50704 * 124.91278 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.69697 * 193.16472 * 14 13 12 16 16 C 1.54261 * 110.78955 * 69.63683 * 14 13 12 17 17 C 1.52327 * 112.58746 * 217.20009 * 16 14 13 18 18 C 1.54258 * 112.59153 * 359.97438 * 17 16 14 19 19 S 1.83960 * 110.78581 * 316.47647 * 14 13 12 20 20 S 1.70970 * 110.16826 * 0.22888 * 13 12 11 21 21 H 0.97001 * 120.00445 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47245 * 60.00670 * 9 7 2 23 23 H 1.08991 * 109.47320 * 299.99864 * 9 7 2 24 24 H 1.08008 * 122.75208 * 0.02562 * 11 10 9 25 25 H 1.09003 * 108.86719 * 338.01947 * 16 14 13 26 26 H 1.08998 * 108.86463 * 96.52179 * 16 14 13 27 27 H 1.08998 * 108.86778 * 120.82186 * 17 16 14 28 28 H 1.09009 * 108.86633 * 239.32484 * 17 16 14 29 29 H 1.08993 * 110.79061 * 266.26091 * 18 17 16 30 30 H 1.08998 * 110.78674 * 142.80439 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 6 2.7418 -4.2419 1.0820 12 7 3.5804 -5.2237 0.8183 13 6 3.8045 -5.4880 -0.4246 14 6 4.7283 -6.5690 -0.9236 15 1 4.9264 -6.4454 -1.9883 16 6 4.1449 -7.9665 -0.6297 17 6 5.2162 -8.9785 -0.2442 18 6 6.6331 -8.3685 -0.2387 19 16 6.2981 -6.5803 0.0355 20 16 2.9070 -4.4296 -1.4234 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6248 -2.5563 0.8919 24 1 2.4879 -3.9450 2.0889 25 1 3.4274 -7.8844 0.1867 26 1 3.6267 -8.3262 -1.5186 27 1 4.9945 -9.3648 0.7507 28 1 5.1933 -9.8043 -0.9554 29 1 7.1264 -8.5276 -1.1975 30 1 7.2281 -8.7798 0.5767 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260818552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:02 Heat of formation + Delta-G solvation = 27.078669 kcal Electronic energy + Delta-G solvation = -13930.623434 eV Core-core repulsion = 11557.159667 eV Total energy + Delta-G solvation = -2373.463767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.13603 -36.20206 -33.67055 -31.73220 -29.94500 -26.83925 -25.56203 -23.70448 -22.31827 -20.73994 -18.79528 -17.60465 -16.50450 -16.33928 -15.70720 -14.75586 -14.46584 -14.33369 -13.77439 -13.51159 -12.85906 -12.72663 -12.37248 -12.08068 -11.82037 -11.75065 -11.56058 -10.95529 -10.84869 -10.69762 -10.37055 -10.03575 -9.91710 -9.67078 -9.02495 -8.56520 -8.51689 -8.02109 -7.61405 -6.15903 -4.21602 1.16249 1.71813 2.11955 2.29945 2.48200 3.27864 3.31671 3.35161 3.52565 4.33026 4.36020 4.37412 4.60589 4.87611 4.98083 5.01799 5.19538 5.30709 5.46073 5.66315 5.78487 5.81703 6.00570 6.15380 6.25914 6.86613 7.29458 7.37206 7.78101 8.11147 8.32899 8.81749 9.43491 10.93557 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.045059 B = 0.004787 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.252934 B = 5848.154232 C = 6111.486690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.082 3.918 10 C -0.125 4.125 11 C -0.012 4.012 12 N -0.438 5.438 13 C 0.000 4.000 14 C 0.053 3.947 15 H 0.108 0.892 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.079 4.079 19 S -0.251 6.251 20 S 0.106 5.894 21 H 0.265 0.735 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.172 0.828 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -16.218 -3.166 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.246 4.246 11 C -0.160 4.160 12 N -0.152 5.152 13 C -0.278 4.278 14 C -0.079 4.079 15 H 0.126 0.874 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.228 4.228 19 S -0.024 6.024 20 S 0.359 5.641 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.189 0.811 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.838 -15.442 -3.210 18.079 hybrid contribution -0.369 0.426 0.294 0.636 sum 8.469 -15.015 -2.916 17.484 Atomic orbital electron populations 1.69930 1.06049 1.27318 1.49716 1.24982 0.94924 0.99342 0.94716 0.86528 0.79532 0.82379 0.78928 1.20015 1.21058 1.19989 1.20982 0.93110 0.89413 1.52263 0.92317 1.17969 0.91267 0.87374 0.99167 1.26968 1.03374 1.01737 0.92564 1.21580 0.98541 0.95458 1.00457 1.66079 1.14614 1.16201 1.18278 1.25630 1.06021 1.03468 0.92667 1.22164 0.91793 0.93783 1.00191 0.87423 1.22116 0.99301 0.91083 1.03338 1.21959 0.92124 0.98676 1.03215 1.24172 0.99590 0.93897 1.05114 1.88407 1.28667 1.13227 1.72114 1.83797 1.39753 1.27470 1.13094 0.92509 0.94647 0.93522 0.81054 0.89724 0.90522 0.90501 0.90856 0.89438 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.25 9.09 -34.44 -0.31 -14.57 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.08 2.04 5.51 -29.03 -0.16 1.88 16 10 C -0.12 -2.70 5.79 -35.92 -0.21 -2.91 16 11 C -0.01 -0.24 11.25 -19.19 -0.22 -0.46 16 12 N -0.44 -8.55 10.32 -11.86 -0.12 -8.67 16 13 C 0.00 0.00 6.01 -13.45 -0.08 -0.08 16 14 C 0.05 0.72 3.82 -27.22 -0.10 0.62 16 15 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.12 -1.30 5.92 -26.41 -0.16 -1.46 16 17 C -0.12 -1.06 6.30 -26.42 -0.17 -1.22 16 18 C -0.08 -0.74 7.46 37.82 0.28 -0.46 16 19 S -0.25 -3.61 22.56 -107.50 -2.43 -6.04 16 20 S 0.11 1.93 23.18 -107.50 -2.49 -0.56 16 21 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 22 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.17 3.33 8.06 -52.48 -0.42 2.91 16 25 H 0.08 1.09 7.77 -51.93 -0.40 0.68 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 283.83 15.07 4.28 4.28 Total: -1.00 -29.82 283.83 -10.02 -39.84 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.75 Total: -3.22 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.22 Total: -17.01 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.61 Total: -33.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -4.92 Total: -6.60 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.82 -10.02 -39.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.916 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds