Wall clock time and date at job start Mon Mar 30 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48495 * 109.46622 * 240.00083 * 3 2 1 5 5 H 1.48497 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47196 * 120.00056 * 3 2 1 7 7 C 1.37871 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.50709 * 109.46789 * 179.97438 * 9 7 2 11 11 C 1.33634 * 126.03535 * 90.02778 * 10 9 7 12 12 N 1.31781 * 114.50388 * 179.97438 * 11 10 9 13 13 C 1.29033 * 117.11833 * 359.97438 * 12 11 10 14 14 C 1.50704 * 124.91278 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.69697 * 193.16472 * 14 13 12 16 16 C 1.54261 * 110.78955 * 69.63683 * 14 13 12 17 17 C 1.52327 * 112.58746 * 217.20009 * 16 14 13 18 18 C 1.54258 * 112.59153 * 359.97438 * 17 16 14 19 19 S 1.83960 * 110.78581 * 316.47647 * 14 13 12 20 20 S 1.70970 * 110.16826 * 0.22888 * 13 12 11 21 21 H 0.97001 * 120.00445 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47245 * 60.00670 * 9 7 2 23 23 H 1.08991 * 109.47320 * 299.99864 * 9 7 2 24 24 H 1.08008 * 122.75208 * 0.02562 * 11 10 9 25 25 H 1.09003 * 108.86719 * 338.01947 * 16 14 13 26 26 H 1.08998 * 108.86463 * 96.52179 * 16 14 13 27 27 H 1.08998 * 108.86778 * 120.82186 * 17 16 14 28 28 H 1.09009 * 108.86633 * 239.32484 * 17 16 14 29 29 H 1.08993 * 110.79061 * 266.26091 * 18 17 16 30 30 H 1.08998 * 110.78674 * 142.80439 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 6 2.7418 -4.2419 1.0820 12 7 3.5804 -5.2237 0.8183 13 6 3.8045 -5.4880 -0.4246 14 6 4.7283 -6.5690 -0.9236 15 1 4.9264 -6.4454 -1.9883 16 6 4.1449 -7.9665 -0.6297 17 6 5.2162 -8.9785 -0.2442 18 6 6.6331 -8.3685 -0.2387 19 16 6.2981 -6.5803 0.0355 20 16 2.9070 -4.4296 -1.4234 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6248 -2.5563 0.8919 24 1 2.4879 -3.9450 2.0889 25 1 3.4274 -7.8844 0.1867 26 1 3.6267 -8.3262 -1.5186 27 1 4.9945 -9.3648 0.7507 28 1 5.1933 -9.8043 -0.9554 29 1 7.1264 -8.5276 -1.1975 30 1 7.2281 -8.7798 0.5767 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260818552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:02 Heat of formation + Delta-G solvation = 10.254816 kcal Electronic energy + Delta-G solvation = -13931.352971 eV Core-core repulsion = 11557.159667 eV Total energy + Delta-G solvation = -2374.193304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65880 -37.13613 -35.61526 -33.31281 -31.36121 -28.32601 -26.88510 -25.22005 -24.03244 -21.69506 -20.20932 -19.06939 -18.58177 -17.47861 -16.82074 -16.56997 -15.79855 -15.49242 -15.07153 -14.76034 -14.36174 -14.18733 -13.87473 -13.65790 -13.23792 -12.78652 -12.72078 -12.64441 -12.51668 -12.12365 -11.94863 -11.71238 -11.43392 -10.87891 -10.68550 -10.49745 -10.08957 -9.62808 -8.72035 -8.26934 -6.40921 -0.28321 0.30733 0.77883 1.06740 1.37266 1.39186 1.40680 1.49264 1.97743 2.37658 3.03577 3.05366 3.50769 3.75574 4.00305 4.19221 4.22223 4.33121 4.39738 4.55802 4.60497 4.79283 5.02661 5.09185 5.18144 5.21152 5.29035 5.37714 5.63957 6.03229 6.67622 6.80395 7.28263 8.82144 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.045059 B = 0.004787 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.252934 B = 5848.154232 C = 6111.486690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.094 3.906 10 C -0.172 4.172 11 C -0.005 4.005 12 N -0.460 5.460 13 C 0.023 3.977 14 C 0.053 3.947 15 H 0.130 0.870 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.055 4.055 19 S -0.332 6.332 20 S 0.141 5.859 21 H 0.269 0.731 22 H 0.016 0.984 23 H 0.025 0.975 24 H 0.173 0.827 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.865 -17.970 -4.274 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.055 3.945 10 C -0.293 4.293 11 C -0.154 4.154 12 N -0.174 5.174 13 C -0.256 4.256 14 C -0.079 4.079 15 H 0.148 0.852 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.203 4.203 19 S -0.106 6.106 20 S 0.395 5.605 21 H 0.078 0.922 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.190 0.810 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.512 -17.195 -4.324 20.612 hybrid contribution -0.811 0.803 0.611 1.295 sum 9.700 -16.392 -3.713 19.406 Atomic orbital electron populations 1.70033 1.07459 1.28354 1.50410 1.25819 0.95753 1.02804 0.94155 0.85528 0.78402 0.78240 0.79114 1.19281 1.20134 1.19563 1.21261 0.92948 0.90959 1.52302 0.93054 1.17573 0.91435 0.88297 0.97196 1.26564 1.05072 1.02734 0.94970 1.21664 0.98002 0.95247 1.00440 1.66173 1.15331 1.16548 1.19359 1.26440 1.04398 1.02752 0.91994 1.22443 0.90488 0.94049 1.00878 0.85173 1.22155 0.99770 0.89869 1.03766 1.21961 0.90718 0.98620 1.04313 1.24341 1.00434 0.88587 1.06890 1.88683 1.29535 1.19353 1.72996 1.83529 1.39078 1.26725 1.11147 0.92220 0.96584 0.95670 0.81032 0.91937 0.87861 0.90471 0.87425 0.87064 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 13.29 21.45 0.28 -53.87 16 2 C 0.01 0.80 5.46 84.65 0.46 1.26 16 3 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -30.27 9.09 25.60 0.23 -30.04 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.09 4.94 5.51 29.11 0.16 5.10 16 10 C -0.17 -7.64 5.79 24.64 0.14 -7.50 16 11 C 0.00 -0.20 11.25 83.66 0.94 0.74 16 12 N -0.46 -17.96 10.32 -191.44 -1.98 -19.93 16 13 C 0.02 0.77 6.01 88.52 0.53 1.30 16 14 C 0.05 1.34 3.82 30.28 0.12 1.45 16 15 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 16 C -0.11 -2.17 5.92 30.80 0.18 -1.99 16 17 C -0.12 -1.56 6.30 30.80 0.19 -1.37 16 18 C -0.05 -0.81 7.46 72.41 0.54 -0.27 16 19 S -0.33 -9.00 22.56 -56.49 -1.27 -10.28 16 20 S 0.14 5.08 23.18 -56.49 -1.31 3.77 16 21 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.17 6.97 8.06 -2.91 -0.02 6.94 16 25 H 0.06 1.48 7.77 -2.39 -0.02 1.46 16 26 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.96 283.83 2.38 -63.57 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.13 Total: 2.14 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 3.50 Total: -31.32 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.69 Total: -73.80 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.58 Total: -6.50 kcal Total: -65.96 2.38 -63.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.830 kcal (2) G-P(sol) polarization free energy of solvation -65.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds