Wall clock time and date at job start Mon Mar 30 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00143 * 2 1 4 4 H 1.48497 * 109.47265 * 270.00074 * 3 2 1 5 5 H 1.48502 * 109.46784 * 30.00047 * 3 2 1 6 6 H 1.48501 * 109.46893 * 149.99860 * 3 2 1 7 7 C 1.37874 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47728 * 180.02562 * 9 7 2 11 11 C 1.33639 * 122.74716 * 84.97335 * 10 9 7 12 12 S 1.76199 * 107.92112 * 180.02562 * 11 10 9 13 13 C 1.70973 * 90.28365 * 0.02562 * 12 11 10 14 14 C 1.50702 * 124.91553 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.35797 * 165.89061 * 14 13 12 16 16 C 1.54272 * 110.40182 * 288.34422 * 14 13 12 17 17 C 1.53854 * 108.92702 * 146.74625 * 16 14 13 18 18 C 1.55136 * 106.90124 * 312.74455 * 17 16 14 19 19 S 1.83100 * 110.40060 * 43.57448 * 14 13 12 20 20 N 1.29029 * 110.17093 * 0.24178 * 13 12 11 21 21 H 0.96995 * 119.99787 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46845 * 60.00339 * 9 7 2 23 23 H 1.09003 * 109.47313 * 300.00783 * 9 7 2 24 24 H 1.07998 * 126.03963 * 0.04243 * 11 10 9 25 25 H 1.08999 * 109.60773 * 266.66777 * 16 14 13 26 26 H 1.08997 * 109.61089 * 27.00292 * 16 14 13 27 27 H 1.09004 * 109.97746 * 72.10550 * 17 16 14 28 28 H 1.09000 * 109.97677 * 193.34348 * 17 16 14 29 29 H 1.09006 * 110.85800 * 283.94016 * 18 17 16 30 30 H 1.08997 * 110.85873 * 160.29341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.7748 -4.1302 1.1191 12 16 3.8522 -5.4501 0.6699 13 6 3.4637 -5.2173 -0.9787 14 6 4.0252 -6.0261 -2.1197 15 1 3.4456 -5.8552 -3.0269 16 6 5.5086 -5.6716 -2.3514 17 6 6.2537 -6.9300 -2.8291 18 6 5.8391 -8.0865 -1.8819 19 16 4.0355 -7.8072 -1.6951 20 7 2.6246 -4.2453 -1.1052 21 1 -0.4849 0.8400 -0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.5875 -3.7762 2.1221 25 1 5.5843 -4.8918 -3.1092 26 1 5.9506 -5.3198 -1.4192 27 1 5.9662 -7.1666 -3.8536 28 1 7.3303 -6.7694 -2.7725 29 1 6.3465 -8.0019 -0.9208 30 1 6.0362 -9.0547 -2.3421 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260836682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:15 Heat of formation + Delta-G solvation = 27.284510 kcal Electronic energy + Delta-G solvation = -14074.411201 eV Core-core repulsion = 11700.956360 eV Total energy + Delta-G solvation = -2373.454841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.23381 -36.38689 -33.30930 -31.64933 -29.30294 -27.27636 -25.64532 -23.83525 -22.01803 -20.92148 -19.20033 -17.34818 -16.37123 -16.27108 -15.79775 -14.78925 -14.63490 -14.44883 -13.69832 -13.33756 -12.80792 -12.66498 -12.30558 -11.98060 -11.82753 -11.63269 -11.47583 -11.14693 -11.06060 -10.70234 -10.48984 -10.12873 -9.76410 -9.47505 -9.05025 -8.79274 -8.43556 -8.10188 -7.66547 -6.05720 -4.08928 1.10483 1.72869 1.92336 2.18858 2.40590 3.30097 3.35546 3.38708 3.62246 4.17299 4.35183 4.44042 4.62446 4.69760 4.96086 5.16371 5.29511 5.32131 5.43809 5.55731 5.69784 5.73059 5.87385 6.03492 6.33039 7.01199 7.46881 7.54764 7.89453 8.27350 8.52001 8.93523 9.53934 11.04742 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.037818 B = 0.005100 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.211829 B = 5489.117610 C = 5744.813781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.084 3.916 10 C 0.110 3.890 11 C -0.262 4.262 12 S 0.091 5.909 13 C 0.037 3.963 14 C 0.041 3.959 15 H 0.126 0.874 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.079 4.079 19 S -0.267 6.267 20 N -0.450 5.450 21 H 0.263 0.737 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.173 0.827 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -14.561 -2.814 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.044 3.956 10 C -0.020 4.020 11 C -0.401 4.401 12 S 0.343 5.657 13 C -0.243 4.243 14 C -0.091 4.091 15 H 0.144 0.856 16 C -0.165 4.165 17 C -0.164 4.164 18 C -0.227 4.227 19 S -0.040 6.040 20 N -0.166 5.166 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.190 0.810 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.897 -15.763 -2.494 19.906 hybrid contribution 0.666 2.474 -0.250 2.574 sum 12.563 -13.289 -2.744 18.492 Atomic orbital electron populations 1.69949 1.06001 1.26910 1.50342 1.24971 0.94893 0.99197 0.95131 0.86506 0.79743 0.83062 0.78209 1.20548 1.21073 1.19874 1.20968 0.92910 0.89740 1.51217 0.92677 1.18005 0.91351 0.87278 0.98936 1.21194 0.98673 0.97238 0.84942 1.26880 1.05853 1.02813 1.04536 1.83475 1.45369 1.33217 1.03601 1.26362 1.01542 0.99611 0.96769 1.22080 0.99081 0.90472 0.97437 0.85624 1.22510 0.91068 0.99088 1.03852 1.22575 1.01414 0.92596 0.99806 1.24328 0.93249 1.02105 1.03047 1.87830 1.12201 1.11617 1.92353 1.66145 1.10967 1.06576 1.32891 0.92748 0.94326 0.94418 0.80970 0.88825 0.90141 0.89979 0.89433 0.88943 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.08 2.25 5.39 -29.04 -0.16 2.10 16 10 C 0.11 2.55 5.93 -84.22 -0.50 2.05 16 11 C -0.26 -5.25 11.14 29.12 0.32 -4.92 16 12 S 0.09 1.50 22.47 -107.50 -2.42 -0.92 16 13 C 0.04 0.66 6.12 -13.45 -0.08 0.58 16 14 C 0.04 0.58 3.77 -27.22 -0.10 0.48 16 15 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 16 C -0.13 -1.36 5.92 -25.62 -0.15 -1.52 16 17 C -0.13 -0.98 6.46 -25.16 -0.16 -1.15 16 18 C -0.08 -0.67 7.38 38.29 0.28 -0.39 16 19 S -0.27 -3.43 22.14 -107.50 -2.38 -5.81 16 20 N -0.45 -9.95 10.53 -8.06 -0.08 -10.03 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.04 1.11 8.14 -51.92 -0.42 0.69 16 23 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.17 3.16 8.06 -52.49 -0.42 2.74 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.93 7.77 -51.93 -0.40 0.52 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 282.96 15.07 4.26 4.26 Total: -1.00 -31.32 282.96 -9.61 -40.93 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -3.75 Total: -3.23 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.96 Total: -16.05 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.65 Total: -35.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -4.80 Total: -6.73 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.32 -9.61 -40.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.217 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds