Wall clock time and date at job start Mon Mar 30 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00143 * 2 1 4 4 H 1.48497 * 109.47265 * 270.00074 * 3 2 1 5 5 H 1.48502 * 109.46784 * 30.00047 * 3 2 1 6 6 H 1.48501 * 109.46893 * 149.99860 * 3 2 1 7 7 C 1.37874 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47728 * 180.02562 * 9 7 2 11 11 C 1.33639 * 122.74716 * 84.97335 * 10 9 7 12 12 S 1.76199 * 107.92112 * 180.02562 * 11 10 9 13 13 C 1.70973 * 90.28365 * 0.02562 * 12 11 10 14 14 C 1.50702 * 124.91553 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.35797 * 165.89061 * 14 13 12 16 16 C 1.54272 * 110.40182 * 288.34422 * 14 13 12 17 17 C 1.53854 * 108.92702 * 146.74625 * 16 14 13 18 18 C 1.55136 * 106.90124 * 312.74455 * 17 16 14 19 19 S 1.83100 * 110.40060 * 43.57448 * 14 13 12 20 20 N 1.29029 * 110.17093 * 0.24178 * 13 12 11 21 21 H 0.96995 * 119.99787 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46845 * 60.00339 * 9 7 2 23 23 H 1.09003 * 109.47313 * 300.00783 * 9 7 2 24 24 H 1.07998 * 126.03963 * 0.04243 * 11 10 9 25 25 H 1.08999 * 109.60773 * 266.66777 * 16 14 13 26 26 H 1.08997 * 109.61089 * 27.00292 * 16 14 13 27 27 H 1.09004 * 109.97746 * 72.10550 * 17 16 14 28 28 H 1.09000 * 109.97677 * 193.34348 * 17 16 14 29 29 H 1.09006 * 110.85800 * 283.94016 * 18 17 16 30 30 H 1.08997 * 110.85873 * 160.29341 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.7748 -4.1302 1.1191 12 16 3.8522 -5.4501 0.6699 13 6 3.4637 -5.2173 -0.9787 14 6 4.0252 -6.0261 -2.1197 15 1 3.4456 -5.8552 -3.0269 16 6 5.5086 -5.6716 -2.3514 17 6 6.2537 -6.9300 -2.8291 18 6 5.8391 -8.0865 -1.8819 19 16 4.0355 -7.8072 -1.6951 20 7 2.6246 -4.2453 -1.1052 21 1 -0.4849 0.8400 -0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.5875 -3.7762 2.1221 25 1 5.5843 -4.8918 -3.1092 26 1 5.9506 -5.3198 -1.4192 27 1 5.9662 -7.1666 -3.8536 28 1 7.3303 -6.7694 -2.7725 29 1 6.3465 -8.0019 -0.9208 30 1 6.0362 -9.0547 -2.3421 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260836682.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:15 Heat of formation + Delta-G solvation = 8.352172 kcal Electronic energy + Delta-G solvation = -14075.232168 eV Core-core repulsion = 11700.956360 eV Total energy + Delta-G solvation = -2374.275809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81523 -37.29159 -35.35646 -33.14041 -30.77278 -29.00929 -26.71706 -25.68064 -23.41967 -21.84203 -20.75480 -18.75908 -18.54339 -17.40964 -16.91121 -16.59060 -15.88898 -15.59703 -15.03821 -14.66542 -14.28534 -13.99719 -13.84947 -13.65375 -13.06888 -12.92744 -12.72644 -12.59712 -12.40225 -12.37554 -11.90132 -11.66486 -11.59772 -11.01126 -10.65533 -10.56913 -10.27348 -9.57651 -8.79000 -8.24085 -6.37473 -0.28817 0.46035 0.66750 0.85855 1.35714 1.37796 1.40025 1.50995 1.97483 2.40552 2.93953 3.08270 3.52408 3.83837 3.92167 4.06278 4.22653 4.37703 4.43716 4.64262 4.66320 4.73139 4.91433 4.97132 5.13040 5.16166 5.32819 5.41471 5.67234 6.09351 6.71222 6.94023 7.30437 8.86433 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.037818 B = 0.005100 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.211829 B = 5489.117610 C = 5744.813781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.093 3.907 10 C 0.078 3.922 11 C -0.277 4.277 12 S 0.184 5.816 13 C 0.035 3.965 14 C 0.037 3.963 15 H 0.116 0.884 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.064 4.064 19 S -0.309 6.309 20 N -0.497 5.497 21 H 0.268 0.732 22 H 0.001 0.999 23 H 0.020 0.980 24 H 0.183 0.817 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.640 -15.579 -2.801 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.069 0.931 9 C 0.053 3.947 10 C -0.053 4.053 11 C -0.416 4.416 12 S 0.438 5.562 13 C -0.244 4.244 14 C -0.095 4.095 15 H 0.134 0.866 16 C -0.164 4.164 17 C -0.154 4.154 18 C -0.211 4.211 19 S -0.082 6.082 20 N -0.214 5.214 21 H 0.076 0.924 22 H 0.019 0.981 23 H 0.038 0.962 24 H 0.200 0.800 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.082 -16.808 -2.477 22.718 hybrid contribution -0.265 2.617 -0.256 2.643 sum 14.817 -14.190 -2.733 20.697 Atomic orbital electron populations 1.70076 1.07705 1.28170 1.50885 1.25925 0.95812 1.03132 0.94301 0.85373 0.78620 0.78085 0.78529 1.19893 1.20024 1.18820 1.21226 0.92823 0.90968 1.51597 0.93072 1.17647 0.91705 0.89105 0.96198 1.20685 0.99960 0.97810 0.86795 1.27075 1.06302 1.04007 1.04205 1.83036 1.42423 1.29669 1.01083 1.27111 0.99809 0.98275 0.99201 1.22217 1.00957 0.90820 0.95529 0.86597 1.22576 0.88899 1.00972 1.03955 1.22571 1.02557 0.90367 0.99873 1.24544 0.88842 1.03560 1.04190 1.87985 1.17432 1.10471 1.92325 1.66063 1.13402 1.08736 1.33157 0.92361 0.98057 0.96207 0.80003 0.88512 0.90527 0.89094 0.86456 0.87737 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.53 -31.28 9.09 25.60 0.23 -31.05 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.09 5.32 5.39 29.10 0.16 5.47 16 10 C 0.08 3.77 5.93 41.52 0.25 4.02 16 11 C -0.28 -11.16 11.14 66.78 0.74 -10.42 16 12 S 0.18 5.76 22.47 -56.49 -1.27 4.49 16 13 C 0.04 1.26 6.12 88.52 0.54 1.80 16 14 C 0.04 1.00 3.77 30.28 0.11 1.12 16 15 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 16 C -0.12 -2.40 5.92 31.31 0.19 -2.22 16 17 C -0.12 -1.34 6.46 31.61 0.20 -1.13 16 18 C -0.06 -0.83 7.38 72.71 0.54 -0.29 16 19 S -0.31 -7.33 22.14 -56.49 -1.25 -8.58 16 20 N -0.50 -22.71 10.53 -179.40 -1.89 -24.60 16 21 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 22 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 23 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.18 6.73 8.06 -2.91 -0.02 6.71 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.08 1.54 7.77 -2.39 -0.02 1.52 16 27 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.87 282.96 2.46 -68.41 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 1.13 Total: 1.87 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.42 Total: -31.84 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.60 Total: -81.28 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.52 Total: -4.08 kcal Total: -70.87 2.46 -68.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260836682.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.765 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds