Wall clock time and date at job start Mon Mar 30 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86792 * 119.99867 * 2 1 4 4 H 1.48501 * 109.47202 * 274.98330 * 3 2 1 5 5 H 1.48500 * 109.47450 * 34.98845 * 3 2 1 6 6 H 1.48502 * 109.47172 * 154.98867 * 3 2 1 7 7 C 1.40069 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00399 * 186.52288 * 7 2 1 9 9 C 1.40050 * 120.00033 * 6.51983 * 7 2 1 10 10 C 1.38585 * 126.25407 * 173.67842 * 9 7 2 11 11 N 1.30677 * 113.54776 * 180.02562 * 10 9 7 12 12 C 1.29510 * 117.63429 * 0.02562 * 11 10 9 13 13 C 1.50703 * 124.56238 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47145 * 90.02785 * 13 12 11 15 15 H 1.08997 * 109.99236 * 53.73108 * 14 13 12 16 16 C 1.53854 * 109.97595 * 175.00273 * 14 13 12 17 17 C 1.54269 * 108.92616 * 166.61457 * 16 14 13 18 18 S 1.83095 * 104.65273 * 332.04471 * 17 16 14 19 19 C 1.55140 * 109.97274 * 292.46490 * 14 13 12 20 20 S 1.70888 * 110.87883 * 0.24585 * 12 11 10 21 21 H 0.96992 * 119.99601 * 0.02562 * 1 2 3 22 22 H 1.08001 * 123.22684 * 0.04175 * 10 9 7 23 23 H 1.08999 * 109.47156 * 330.02526 * 13 12 11 24 24 H 1.09001 * 109.47021 * 210.02641 * 13 12 11 25 25 H 1.08994 * 109.61124 * 46.69134 * 16 14 13 26 26 H 1.09001 * 109.60656 * 286.53146 * 16 14 13 27 27 H 1.09001 * 110.40120 * 90.83824 * 17 16 14 28 28 H 1.08999 * 110.40261 * 213.13160 * 17 16 14 29 29 H 1.09002 * 110.85562 * 80.34478 * 19 14 13 30 30 H 1.09003 * 111.03212 * 316.77890 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3848 2.1072 -1.3948 5 1 1.4968 2.6199 0.8028 6 1 3.5889 1.4120 0.5920 7 6 2.0091 -1.2130 -0.0005 8 1 3.0839 -1.2162 0.1057 9 6 1.3156 -2.4219 -0.1388 10 6 1.8808 -3.6795 -0.2791 11 7 0.9999 -4.6383 -0.3902 12 6 -0.2526 -4.3101 -0.3576 13 6 -1.3953 -5.2859 -0.4720 14 6 -1.7876 -5.7778 0.9226 15 1 -1.9891 -4.9278 1.5745 16 6 -3.0324 -6.6774 0.8319 17 6 -3.2087 -7.4243 2.1701 18 16 -1.5142 -7.5633 2.8496 19 6 -0.6474 -6.6445 1.5190 20 16 -0.4349 -2.6209 -0.1747 21 1 -0.4849 0.8400 -0.0004 22 1 2.9470 -3.8507 -0.2949 23 1 -1.0887 -6.1344 -1.0836 24 1 -2.2490 -4.7927 -0.9368 25 1 -2.9047 -7.3984 0.0245 26 1 -3.9127 -6.0650 0.6360 27 1 -3.8429 -6.8498 2.8453 28 1 -3.6341 -8.4134 2.0000 29 1 0.1421 -6.0165 1.9318 30 1 -0.2456 -7.3297 0.7726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260856147.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:54 Heat of formation + Delta-G solvation = -16.657740 kcal Electronic energy + Delta-G solvation = -14245.507738 eV Core-core repulsion = 11870.147418 eV Total energy + Delta-G solvation = -2375.360320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.52304 -37.77302 -36.03799 -32.52416 -30.88300 -29.03784 -26.61281 -25.01088 -23.46230 -21.18931 -20.65493 -19.34583 -17.57889 -17.40656 -17.12088 -16.42964 -15.37486 -15.27497 -14.71141 -14.60491 -14.29989 -13.87214 -13.67975 -13.62970 -13.10968 -13.01714 -12.86447 -12.44428 -12.36590 -12.00620 -11.97154 -11.63870 -11.50450 -11.31369 -10.88430 -9.78166 -9.68368 -9.11666 -8.86036 -8.74208 -6.54828 0.64634 0.89675 1.36323 1.45727 1.48459 1.52302 1.54301 1.97576 2.17567 2.37843 3.08361 3.65031 3.69703 3.92565 4.14146 4.20172 4.35356 4.55083 4.64239 4.76690 4.81799 4.83847 4.92275 4.98284 5.12032 5.18008 5.26263 5.33678 5.80027 6.01488 6.38926 6.45854 7.81872 7.98560 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.042273 B = 0.005121 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.201606 B = 5466.259234 C = 5564.405113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.014 3.986 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.401 4.401 8 H 0.101 0.899 9 C -0.032 4.032 10 C -0.212 4.212 11 N -0.445 5.445 12 C -0.174 4.174 13 C 0.008 3.992 14 C -0.080 4.080 15 H 0.067 0.933 16 C -0.118 4.118 17 C -0.053 4.053 18 S -0.364 6.364 19 C -0.031 4.031 20 S 0.111 5.889 21 H 0.309 0.691 22 H 0.134 0.866 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -3.319 0.743 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.205 4.205 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.438 4.438 8 H 0.119 0.881 9 C -0.155 4.155 10 C -0.364 4.364 11 N -0.157 5.157 12 C -0.445 4.445 13 C -0.034 4.034 14 C -0.102 4.102 15 H 0.086 0.914 16 C -0.156 4.156 17 C -0.200 4.200 18 S -0.139 6.139 19 C -0.179 4.179 20 S 0.361 5.639 21 H 0.122 0.878 22 H 0.151 0.849 23 H 0.091 0.909 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.227 -3.777 1.745 9.220 hybrid contribution 1.464 0.989 -0.911 1.988 sum -6.764 -2.788 0.834 7.363 Atomic orbital electron populations 1.69043 1.08996 1.32512 1.31601 1.27208 0.95998 1.05696 0.91646 0.84693 0.78771 0.73717 0.79809 1.18281 1.18331 1.17778 1.19553 0.96461 0.89516 1.38246 0.88060 1.23651 0.95622 0.97841 0.98364 1.21496 0.98127 0.87688 1.29088 1.65192 1.01486 1.37649 1.11373 1.26536 0.94980 0.99525 1.23469 1.19655 0.92816 0.95485 0.95474 1.22195 0.93117 0.97843 0.96997 0.91406 1.22333 0.97834 0.98733 0.96695 1.24066 0.92056 1.05198 0.98715 1.87555 1.11026 1.75828 1.39441 1.24034 0.99217 0.98629 0.96034 1.83769 1.05741 1.00756 1.73586 0.87763 0.84858 0.90918 0.89782 0.89363 0.87482 0.87909 0.86576 0.91545 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.14 10.80 21.86 0.24 -36.91 16 2 C 0.01 0.64 5.49 85.28 0.47 1.11 16 3 Si 1.01 33.92 29.57 68.60 2.03 35.94 16 4 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 5 H -0.26 -8.13 7.11 99.48 0.71 -7.43 16 6 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 7 C -0.40 -20.37 9.32 23.15 0.22 -20.15 16 8 H 0.10 4.87 7.86 -2.91 -0.02 4.84 16 9 C -0.03 -1.70 6.24 22.79 0.14 -1.56 16 10 C -0.21 -11.43 11.46 84.95 0.97 -10.45 16 11 N -0.44 -22.83 10.45 -188.22 -1.97 -24.80 16 12 C -0.17 -8.05 6.18 88.45 0.55 -7.50 16 13 C 0.01 0.28 5.26 29.85 0.16 0.43 16 14 C -0.08 -2.48 2.57 -9.77 -0.03 -2.50 16 15 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 16 C -0.12 -2.52 5.74 31.31 0.18 -2.34 16 17 C -0.05 -1.11 7.34 72.41 0.53 -0.58 16 18 S -0.36 -11.21 23.26 -56.49 -1.31 -12.53 16 19 C -0.03 -1.08 6.27 72.72 0.46 -0.62 16 20 S 0.11 5.44 20.26 -56.49 -1.14 4.30 16 21 H 0.31 12.70 8.30 -92.71 -0.77 11.93 16 22 H 0.13 6.92 8.06 -2.91 -0.02 6.90 16 23 H 0.07 2.44 8.10 -2.39 -0.02 2.42 16 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 26 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.09 2.98 8.07 -2.39 -0.02 2.96 16 Total: -1.00 -59.54 278.86 2.62 -56.92 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.13 Total: 21.24 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.65 Total: -44.17 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -1.73 Total: -61.71 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.94 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -2.46 Total: -8.23 kcal Total: -59.54 2.62 -56.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856147.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.266 kcal (2) G-P(sol) polarization free energy of solvation -59.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds