Wall clock time and date at job start Mon Mar 30 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86803 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47068 * 239.99553 * 3 2 1 5 5 H 1.48505 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47219 * 119.99542 * 3 2 1 7 7 C 1.40078 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99832 * 180.02562 * 7 2 1 9 9 C 1.40044 * 119.99605 * 0.02562 * 7 2 1 10 10 C 1.38577 * 126.25452 * 359.97438 * 9 7 2 11 11 N 1.30674 * 113.54768 * 180.02562 * 10 9 7 12 12 C 1.29516 * 117.63603 * 0.02562 * 11 10 9 13 13 C 1.50700 * 124.56828 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47292 * 90.01962 * 13 12 11 15 15 H 1.09005 * 109.59960 * 305.70909 * 14 13 12 16 16 C 1.52934 * 109.60792 * 185.38073 * 14 13 12 17 17 C 1.53706 * 112.49285 * 209.97275 * 16 14 13 18 18 S 1.83386 * 104.96912 * 2.82287 * 17 16 14 19 19 C 1.55158 * 109.60320 * 66.02763 * 14 13 12 20 20 S 1.70880 * 110.87551 * 359.97438 * 12 11 10 21 21 H 0.97000 * 119.99964 * 0.02562 * 1 2 3 22 22 H 1.08000 * 123.22620 * 0.02562 * 10 9 7 23 23 H 1.08995 * 109.47605 * 210.02077 * 13 12 11 24 24 H 1.08998 * 109.47102 * 330.02799 * 13 12 11 25 25 H 1.09001 * 108.88516 * 330.76561 * 16 14 13 26 26 H 1.09008 * 108.88961 * 89.17576 * 16 14 13 27 27 H 1.09002 * 110.34128 * 121.69753 * 17 16 14 28 28 H 1.09007 * 110.33956 * 243.95298 * 17 16 14 29 29 H 1.09006 * 111.13246 * 279.28319 * 19 14 13 30 30 H 1.09001 * 111.12847 * 43.45848 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0965 1.6963 -1.2124 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0090 -1.2131 0.0005 8 1 3.0891 -1.2130 0.0010 9 6 1.3087 -2.4259 0.0005 10 6 -0.0688 -2.5768 0.0005 11 7 -0.4573 -3.8245 0.0011 12 6 0.4596 -4.7392 0.0020 13 6 0.1886 -6.2216 0.0033 14 6 0.0975 -6.7247 -1.4387 15 1 -0.6427 -6.1393 -1.9842 16 6 -0.3094 -8.1989 -1.4432 17 6 0.2566 -8.9615 -2.6519 18 16 1.2818 -7.7337 -3.5488 19 6 1.4811 -6.5855 -2.1269 20 16 2.0183 -4.0389 0.0017 21 1 -0.4850 0.8400 -0.0004 22 1 -0.7554 -1.7432 0.0001 23 1 0.9983 -6.7387 0.5180 24 1 -0.7526 -6.4184 0.5167 25 1 0.0535 -8.6679 -0.5287 26 1 -1.3973 -8.2647 -1.4625 27 1 0.8716 -9.7973 -2.3184 28 1 -0.5535 -9.3165 -3.2891 29 1 1.6487 -5.5644 -2.4697 30 1 2.2835 -6.9127 -1.4657 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260856149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:56 Heat of formation + Delta-G solvation = 6.886936 kcal Electronic energy + Delta-G solvation = -14224.448497 eV Core-core repulsion = 11850.109151 eV Total energy + Delta-G solvation = -2374.339346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.83984 -36.52406 -34.17502 -31.09501 -29.20535 -27.55832 -25.04621 -23.67021 -21.91805 -19.91446 -18.99466 -16.86781 -16.52671 -16.25757 -15.52283 -14.82985 -14.05571 -13.85383 -13.53356 -13.04869 -12.78183 -12.39614 -12.19799 -11.70215 -11.64639 -11.46476 -11.41634 -11.24866 -10.94521 -10.82978 -10.39047 -10.29096 -9.82338 -9.67136 -9.60409 -8.02033 -7.96779 -7.54815 -7.22906 -7.02162 -4.62839 2.05104 2.37138 2.54046 2.86381 2.90382 3.00053 3.17818 3.57015 3.70416 4.33764 4.72069 4.83357 5.03005 5.09988 5.19698 5.44982 5.61624 5.75350 5.81140 5.92759 5.95693 6.12739 6.26011 6.47536 6.60873 6.66247 7.10668 7.38399 7.73769 8.09155 8.30687 8.61360 9.76974 9.78563 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.042602 B = 0.005075 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.089140 B = 5516.143800 C = 5754.078153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.064 3.936 3 Si 0.935 3.065 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.374 4.374 8 H 0.087 0.913 9 C 0.017 3.983 10 C -0.143 4.143 11 N -0.421 5.421 12 C -0.134 4.134 13 C 0.006 3.994 14 C -0.084 4.084 15 H 0.086 0.914 16 C -0.125 4.125 17 C -0.065 4.065 18 S -0.323 6.323 19 C -0.045 4.045 20 S -0.063 6.063 21 H 0.290 0.710 22 H 0.195 0.805 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -7.970 -1.403 8.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.159 4.159 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.411 4.411 8 H 0.105 0.895 9 C -0.105 4.105 10 C -0.297 4.297 11 N -0.133 5.133 12 C -0.402 4.402 13 C -0.037 4.037 14 C -0.106 4.106 15 H 0.105 0.895 16 C -0.164 4.164 17 C -0.213 4.213 18 S -0.097 6.097 19 C -0.193 4.193 20 S 0.187 5.813 21 H 0.102 0.898 22 H 0.211 0.789 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.864 -8.524 -2.560 9.093 hybrid contribution -0.587 1.402 1.120 1.888 sum 1.277 -7.122 -1.440 7.377 Atomic orbital electron populations 1.69462 1.07850 1.29967 1.31566 1.26137 0.95115 1.01875 0.92762 0.85897 0.79701 0.78270 0.80338 1.18448 1.19690 1.18459 1.19034 0.94995 0.88816 1.38267 0.89501 1.23315 0.95696 0.93126 0.98354 1.23099 0.93536 0.91941 1.21135 1.65380 1.36989 1.01744 1.09154 1.24857 0.90026 0.97555 1.27785 1.19611 1.01170 0.89208 0.93724 1.22116 0.95801 0.94597 0.98037 0.89508 1.22046 1.01982 0.95005 0.97373 1.23861 1.00410 0.98625 0.98438 1.87717 1.69878 1.27823 1.24270 1.24484 0.99905 1.00632 0.94262 1.82954 1.15103 1.03811 1.79461 0.89789 0.78866 0.92077 0.91022 0.91019 0.90512 0.89639 0.88859 0.87152 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.43 10.18 55.56 0.57 -17.87 16 2 C 0.06 1.49 5.50 -17.28 -0.09 1.40 16 3 Si 0.94 17.11 29.56 -169.99 -5.03 12.09 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 7 C -0.37 -9.36 9.42 -38.22 -0.36 -9.72 16 8 H 0.09 2.03 7.85 -52.48 -0.41 1.62 16 9 C 0.02 0.44 6.30 -38.78 -0.24 0.19 16 10 C -0.14 -3.90 10.55 -17.92 -0.19 -4.09 16 11 N -0.42 -10.93 10.48 -10.85 -0.11 -11.05 16 12 C -0.13 -3.05 6.20 -13.25 -0.08 -3.14 16 13 C 0.01 0.10 5.06 -27.88 -0.14 -0.04 16 14 C -0.08 -1.33 2.54 -89.51 -0.23 -1.56 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 16 C -0.13 -1.54 5.85 -26.40 -0.15 -1.70 16 17 C -0.07 -0.77 7.38 37.52 0.28 -0.49 16 18 S -0.32 -4.95 23.22 -107.50 -2.50 -7.45 16 19 C -0.04 -0.73 5.90 38.30 0.23 -0.50 16 20 S -0.06 -1.43 22.36 -107.50 -2.40 -3.84 16 21 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 22 H 0.20 5.45 5.36 -52.49 -0.28 5.17 16 23 H 0.06 0.99 8.11 -51.93 -0.42 0.56 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 26 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.11 2.04 7.87 -51.93 -0.41 1.63 16 30 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -27.09 275.89 -9.90 -37.00 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.60 Total: 6.61 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.99 Total: -19.65 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.45 Total: -28.91 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -4.90 Total: -11.29 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.09 -9.90 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.882 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds