Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86801 * 119.99876 * 2 1 4 4 H 1.48502 * 109.46824 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47135 * 29.99991 * 3 2 1 6 6 H 1.48497 * 109.46788 * 149.99944 * 3 2 1 7 7 C 1.39721 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99591 * 186.19483 * 7 2 1 9 9 C 1.41157 * 120.00404 * 6.19076 * 7 2 1 10 10 C 1.37687 * 122.86319 * 174.08758 * 9 7 2 11 11 S 1.70999 * 108.83842 * 180.02562 * 10 9 7 12 12 C 1.75892 * 90.80913 * 0.02562 * 11 10 9 13 13 C 1.50703 * 124.99318 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47049 * 270.02214 * 13 12 11 15 15 H 1.08998 * 109.59886 * 305.70025 * 14 13 12 16 16 C 1.52934 * 109.60357 * 185.37462 * 14 13 12 17 17 C 1.53711 * 112.48983 * 209.96687 * 16 14 13 18 18 S 1.83387 * 104.96796 * 2.82917 * 17 16 14 19 19 C 1.55155 * 109.60137 * 66.02343 * 14 13 12 20 20 N 1.28796 * 110.01404 * 0.22624 * 12 11 10 21 21 H 0.97000 * 119.99767 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.58521 * 359.97438 * 10 9 7 23 23 H 1.09002 * 109.46951 * 30.02109 * 13 12 11 24 24 H 1.08999 * 109.47400 * 150.01818 * 13 12 11 25 25 H 1.09003 * 108.89112 * 330.76184 * 16 14 13 26 26 H 1.08999 * 108.88730 * 89.17950 * 16 14 13 27 27 H 1.09003 * 110.33834 * 121.70121 * 17 16 14 28 28 H 1.09002 * 110.34214 * 243.95025 * 17 16 14 29 29 H 1.09001 * 111.13040 * 279.28094 * 19 14 13 30 30 H 1.08995 * 111.13369 * 43.45963 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0088 -1.2100 -0.0005 8 1 3.0841 -1.2128 0.1004 9 6 1.3093 -2.4289 -0.1329 10 6 1.9435 -3.6444 -0.2596 11 16 0.7614 -4.8725 -0.3956 12 6 -0.5266 -3.6807 -0.2751 13 6 -2.0002 -3.9936 -0.3158 14 6 -2.4916 -3.9472 -1.7639 15 1 -2.2301 -2.9868 -2.2082 16 6 -4.0094 -4.1316 -1.7969 17 6 -4.4910 -4.8123 -3.0882 18 16 -2.9596 -5.1937 -4.0222 19 6 -1.8306 -5.0930 -2.5748 20 7 -0.0252 -2.5007 -0.1522 21 1 -0.4850 0.8401 -0.0004 22 1 3.0126 -3.7972 -0.2720 23 1 -2.1718 -4.9888 0.0944 24 1 -2.5444 -3.2578 0.2763 25 1 -4.3095 -4.7404 -0.9440 26 1 -4.4854 -3.1545 -1.7145 27 1 -5.0306 -5.7300 -2.8542 28 1 -5.1249 -4.1345 -3.6601 29 1 -0.8210 -4.8233 -2.8848 30 1 -1.8304 -6.0249 -2.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260861183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = 19.936010 kcal Electronic energy + Delta-G solvation = -14423.556978 eV Core-core repulsion = 12049.783482 eV Total energy + Delta-G solvation = -2373.773496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.10462 -36.65470 -33.26935 -31.27485 -29.00612 -27.09700 -25.59241 -24.33617 -21.45049 -19.98333 -18.53771 -17.70740 -16.40822 -15.74617 -15.18099 -14.99399 -14.18791 -13.90330 -13.55524 -13.16116 -12.72560 -12.56018 -11.96791 -11.79882 -11.61087 -11.43111 -11.34163 -11.13501 -10.77416 -10.72399 -10.44355 -10.38297 -9.78447 -9.69981 -9.27557 -8.05293 -7.99189 -7.59385 -7.35041 -6.57130 -4.37836 1.98096 2.26550 2.47031 2.89001 3.03996 3.08890 3.12218 3.65767 3.99026 4.24132 4.62064 4.78131 4.94951 5.08249 5.32152 5.41902 5.47186 5.57395 5.68489 5.73239 5.86823 5.95865 6.11131 6.31432 6.47424 6.82066 7.09221 7.23186 7.49227 8.17391 8.52146 8.86264 9.56875 10.30702 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.006220 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.144890 B = 4500.293343 C = 5057.949210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.083 0.917 9 C 0.225 3.775 10 C -0.455 4.455 11 S -0.047 6.047 12 C 0.056 3.944 13 C -0.020 4.020 14 C -0.083 4.083 15 H 0.094 0.906 16 C -0.124 4.124 17 C -0.066 4.066 18 S -0.316 6.316 19 C -0.053 4.053 20 N -0.393 5.393 21 H 0.273 0.727 22 H 0.136 0.864 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 -5.838 -2.263 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.594 4.594 11 S 0.200 5.800 12 C -0.228 4.228 13 C -0.064 4.064 14 C -0.105 4.105 15 H 0.112 0.888 16 C -0.163 4.163 17 C -0.214 4.214 18 S -0.089 6.089 19 C -0.201 4.201 20 N -0.107 5.107 21 H 0.084 0.916 22 H 0.154 0.846 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.541 -6.488 -3.507 11.284 hybrid contribution 0.920 1.806 1.243 2.378 sum -7.621 -4.682 -2.264 9.226 Atomic orbital electron populations 1.70105 1.06974 1.28002 1.32345 1.25982 0.94971 1.01045 0.92993 0.86275 0.80333 0.80694 0.79191 1.19440 1.20226 1.18644 1.18962 0.94513 0.88518 1.44673 0.89841 1.18013 0.85341 0.93107 0.93181 1.25063 1.00961 0.94395 1.38971 1.82617 1.02386 1.17349 1.77623 1.27655 0.98250 0.90874 1.06031 1.20077 0.88810 1.01994 0.95475 1.22051 0.92788 0.99747 0.95889 0.88770 1.22005 0.95576 1.02007 0.96684 1.23874 0.96771 1.03177 0.97564 1.87756 1.06960 1.94120 1.20112 1.24536 1.00521 1.01255 0.93792 1.67361 1.12389 1.19380 1.11559 0.91595 0.84627 0.90690 0.89161 0.90809 0.90130 0.89503 0.88707 0.87130 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.99 11.72 55.54 0.65 -19.34 16 2 C 0.07 1.88 5.49 -17.34 -0.10 1.78 16 3 Si 0.91 19.10 29.56 -169.99 -5.03 14.07 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.43 -11.92 9.23 -37.92 -0.35 -12.27 16 8 H 0.08 2.20 7.85 -52.49 -0.41 1.79 16 9 C 0.23 6.24 6.46 -86.17 -0.56 5.68 16 10 C -0.46 -11.61 10.98 30.53 0.34 -11.27 16 11 S -0.05 -1.01 22.54 -107.50 -2.42 -3.43 16 12 C 0.06 1.22 6.37 -13.55 -0.09 1.13 16 13 C -0.02 -0.34 5.09 -27.88 -0.14 -0.48 16 14 C -0.08 -1.24 2.54 -89.51 -0.23 -1.47 16 15 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.12 -1.42 5.85 -26.40 -0.15 -1.58 16 17 C -0.07 -0.73 7.38 37.53 0.28 -0.45 16 18 S -0.32 -4.58 23.22 -107.50 -2.50 -7.08 16 19 C -0.05 -0.79 5.96 38.30 0.23 -0.56 16 20 N -0.39 -10.33 8.48 -8.36 -0.07 -10.40 16 21 H 0.27 6.63 8.30 -40.82 -0.34 6.29 16 22 H 0.14 3.34 8.06 -52.49 -0.42 2.92 16 23 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 24 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.89 7.93 -51.93 -0.41 1.47 16 30 H 0.09 1.24 8.08 -51.93 -0.42 0.83 16 LS Contribution 279.06 15.07 4.21 4.21 Total: -1.00 -29.30 279.06 -9.67 -38.98 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.74 Total: 2.48 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.77 Total: -19.48 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.58 Total: -29.74 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -4.92 Total: -10.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.30 -9.67 -38.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.912 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds