Wall clock time and date at job start Mon Mar 30 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86801 * 119.99876 * 2 1 4 4 H 1.48502 * 109.46824 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47135 * 29.99991 * 3 2 1 6 6 H 1.48497 * 109.46788 * 149.99944 * 3 2 1 7 7 C 1.39721 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99591 * 186.19483 * 7 2 1 9 9 C 1.41157 * 120.00404 * 6.19076 * 7 2 1 10 10 C 1.37687 * 122.86319 * 174.08758 * 9 7 2 11 11 S 1.70999 * 108.83842 * 180.02562 * 10 9 7 12 12 C 1.75892 * 90.80913 * 0.02562 * 11 10 9 13 13 C 1.50703 * 124.99318 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47049 * 270.02214 * 13 12 11 15 15 H 1.08998 * 109.59886 * 305.70025 * 14 13 12 16 16 C 1.52934 * 109.60357 * 185.37462 * 14 13 12 17 17 C 1.53711 * 112.48983 * 209.96687 * 16 14 13 18 18 S 1.83387 * 104.96796 * 2.82917 * 17 16 14 19 19 C 1.55155 * 109.60137 * 66.02343 * 14 13 12 20 20 N 1.28796 * 110.01404 * 0.22624 * 12 11 10 21 21 H 0.97000 * 119.99767 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.58521 * 359.97438 * 10 9 7 23 23 H 1.09002 * 109.46951 * 30.02109 * 13 12 11 24 24 H 1.08999 * 109.47400 * 150.01818 * 13 12 11 25 25 H 1.09003 * 108.89112 * 330.76184 * 16 14 13 26 26 H 1.08999 * 108.88730 * 89.17950 * 16 14 13 27 27 H 1.09003 * 110.33834 * 121.70121 * 17 16 14 28 28 H 1.09002 * 110.34214 * 243.95025 * 17 16 14 29 29 H 1.09001 * 111.13040 * 279.28094 * 19 14 13 30 30 H 1.08995 * 111.13369 * 43.45963 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0088 -1.2100 -0.0005 8 1 3.0841 -1.2128 0.1004 9 6 1.3093 -2.4289 -0.1329 10 6 1.9435 -3.6444 -0.2596 11 16 0.7614 -4.8725 -0.3956 12 6 -0.5266 -3.6807 -0.2751 13 6 -2.0002 -3.9936 -0.3158 14 6 -2.4916 -3.9472 -1.7639 15 1 -2.2301 -2.9868 -2.2082 16 6 -4.0094 -4.1316 -1.7969 17 6 -4.4910 -4.8123 -3.0882 18 16 -2.9596 -5.1937 -4.0222 19 6 -1.8306 -5.0930 -2.5748 20 7 -0.0252 -2.5007 -0.1522 21 1 -0.4850 0.8401 -0.0004 22 1 3.0126 -3.7972 -0.2720 23 1 -2.1718 -4.9888 0.0944 24 1 -2.5444 -3.2578 0.2763 25 1 -4.3095 -4.7404 -0.9440 26 1 -4.4854 -3.1545 -1.7145 27 1 -5.0306 -5.7300 -2.8542 28 1 -5.1249 -4.1345 -3.6601 29 1 -0.8210 -4.8233 -2.8848 30 1 -1.8304 -6.0249 -2.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:10 Heat of formation + Delta-G solvation = 3.408895 kcal Electronic energy + Delta-G solvation = -14424.273648 eV Core-core repulsion = 12049.783482 eV Total energy + Delta-G solvation = -2374.490165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87331 -37.94999 -35.16692 -32.65322 -30.54386 -28.54851 -27.54253 -25.55130 -23.09830 -21.23485 -20.27994 -19.59387 -17.55452 -17.23865 -16.99333 -16.51453 -15.55579 -15.25162 -14.84297 -14.78307 -14.21279 -13.99675 -13.54638 -13.40510 -12.99164 -12.91473 -12.72556 -12.53592 -12.36168 -12.17799 -12.07166 -11.58412 -11.52024 -11.16169 -10.87547 -9.89789 -9.84506 -9.24083 -8.72286 -8.48862 -6.40354 0.40688 0.92402 1.13160 1.35904 1.39050 1.41666 1.49966 1.76784 2.21881 2.35416 3.40152 3.46482 3.64393 3.82805 4.09620 4.14791 4.26734 4.38596 4.51726 4.71599 4.82456 4.88757 4.91280 5.04157 5.10247 5.17578 5.27115 5.35979 5.52383 6.15181 6.52894 6.86821 7.68230 8.40547 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.006220 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.144890 B = 4500.293343 C = 5057.949210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.030 3.970 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.079 0.921 9 C 0.197 3.803 10 C -0.493 4.493 11 S 0.014 5.986 12 C 0.065 3.935 13 C -0.019 4.019 14 C -0.075 4.075 15 H 0.057 0.943 16 C -0.118 4.118 17 C -0.050 4.050 18 S -0.360 6.360 19 C -0.048 4.048 20 N -0.440 5.440 21 H 0.281 0.719 22 H 0.131 0.869 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 -6.311 -1.967 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.509 4.509 8 H 0.097 0.903 9 C 0.074 3.926 10 C -0.632 4.632 11 S 0.263 5.737 12 C -0.219 4.219 13 C -0.062 4.062 14 C -0.097 4.097 15 H 0.076 0.924 16 C -0.157 4.157 17 C -0.197 4.197 18 S -0.134 6.134 19 C -0.196 4.196 20 N -0.155 5.155 21 H 0.091 0.909 22 H 0.149 0.851 23 H 0.129 0.871 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.436 -6.999 -3.214 12.970 hybrid contribution 1.448 1.828 1.122 2.588 sum -8.989 -5.171 -2.092 10.579 Atomic orbital electron populations 1.70178 1.08392 1.29374 1.32382 1.26863 0.95891 1.04276 0.91979 0.85127 0.78924 0.75786 0.79366 1.18950 1.18741 1.18290 1.19293 0.94700 0.90052 1.46810 0.90311 1.18426 0.86608 0.93939 0.93583 1.25327 1.02060 0.96025 1.39747 1.82149 1.00106 1.14811 1.76637 1.28644 1.00713 0.90144 1.02354 1.20337 0.85090 1.03970 0.96809 1.21937 0.95550 0.97955 0.94287 0.92443 1.21947 0.92423 1.03281 0.98031 1.24021 0.94598 1.04631 0.96469 1.87941 1.09692 1.94325 1.21453 1.24421 0.99183 1.01882 0.94108 1.67372 1.11850 1.21612 1.14617 0.90865 0.85086 0.87077 0.88810 0.88022 0.89303 0.86883 0.87380 0.90042 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.31 11.72 21.80 0.26 -42.05 16 2 C 0.03 1.56 5.49 85.17 0.47 2.02 16 3 Si 0.99 39.65 29.56 68.60 2.03 41.68 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.47 -27.22 9.23 23.35 0.22 -27.00 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.20 11.29 6.46 39.45 0.25 11.54 16 10 C -0.49 -25.94 10.98 67.69 0.74 -25.20 16 11 S 0.01 0.60 22.54 -56.49 -1.27 -0.67 16 12 C 0.07 2.83 6.37 88.55 0.56 3.40 16 13 C -0.02 -0.59 5.09 29.85 0.15 -0.44 16 14 C -0.08 -2.12 2.54 -10.08 -0.03 -2.15 16 15 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -2.29 5.85 30.81 0.18 -2.11 16 17 C -0.05 -0.92 7.38 72.22 0.53 -0.38 16 18 S -0.36 -9.93 23.22 -56.49 -1.31 -11.24 16 19 C -0.05 -1.37 5.96 72.72 0.43 -0.94 16 20 N -0.44 -23.65 8.48 -180.35 -1.53 -25.18 16 21 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 22 H 0.13 6.76 8.06 -2.91 -0.02 6.74 16 23 H 0.11 2.64 8.11 -2.39 -0.02 2.62 16 24 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 25 H 0.10 1.48 7.80 -2.39 -0.02 1.46 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 30 H 0.11 2.69 8.08 -2.39 -0.02 2.67 16 Total: -1.00 -66.38 279.06 2.82 -63.56 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.13 Total: 15.17 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 3.52 Total: -41.26 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.27 Total: -67.24 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -2.59 Total: -11.92 kcal Total: -66.38 2.82 -63.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.974 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds