Wall clock time and date at job start Mon Mar 30 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47094 * 239.99388 * 3 2 1 5 5 H 1.48497 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47316 * 119.99983 * 3 2 1 7 7 C 1.37883 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47383 * 179.97438 * 9 7 2 11 11 C 1.33635 * 122.74873 * 84.97201 * 10 9 7 12 12 S 1.76199 * 107.92344 * 180.02562 * 11 10 9 13 13 C 1.70977 * 90.28221 * 359.97438 * 12 11 10 14 14 C 1.50699 * 124.91502 * 179.97438 * 13 12 11 15 15 H 1.08995 * 108.83160 * 179.32610 * 14 13 12 16 16 C 1.52341 * 108.87050 * 297.85800 * 14 13 12 17 17 C 1.54254 * 112.58875 * 120.82165 * 16 14 13 18 18 S 1.83956 * 102.58109 * 24.52697 * 17 16 14 19 19 C 1.54264 * 108.86988 * 60.79600 * 14 13 12 20 20 N 1.29027 * 110.16578 * 0.02562 * 13 12 11 21 21 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47317 * 59.99326 * 9 7 2 23 23 H 1.09004 * 109.46892 * 299.99522 * 9 7 2 24 24 H 1.08001 * 126.03996 * 0.03618 * 11 10 9 25 25 H 1.08997 * 108.86611 * 241.63698 * 16 14 13 26 26 H 1.08994 * 108.86310 * 0.14226 * 16 14 13 27 27 H 1.09001 * 110.78936 * 142.80083 * 17 16 14 28 28 H 1.09001 * 110.78242 * 266.25635 * 17 16 14 29 29 H 1.08999 * 110.78674 * 332.92515 * 19 14 13 30 30 H 1.08999 * 110.78362 * 96.37454 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.7750 -4.1301 1.1201 12 16 3.8524 -5.4499 0.6710 13 6 3.4627 -5.2182 -0.9776 14 6 4.0236 -6.0274 -2.1185 15 1 3.5907 -5.6671 -3.0516 16 6 5.5333 -5.8300 -2.1672 17 6 6.3094 -7.1540 -2.0117 18 16 5.0880 -8.4041 -2.5856 19 6 3.6282 -7.5057 -1.9233 20 7 2.6198 -4.2495 -1.1035 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8904 24 1 2.5877 -3.7761 2.1232 25 1 5.7988 -5.3758 -3.1218 26 1 5.8266 -5.1553 -1.3629 27 1 7.1958 -7.1596 -2.6460 28 1 6.5773 -7.3252 -0.9691 29 1 3.4816 -7.7307 -0.8669 30 1 2.7343 -7.7463 -2.4988 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:23 Heat of formation + Delta-G solvation = 11.470819 kcal Electronic energy + Delta-G solvation = -14134.833231 eV Core-core repulsion = 11760.692657 eV Total energy + Delta-G solvation = -2374.140574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90507 -37.66911 -35.27714 -32.55004 -30.77265 -29.17735 -26.99168 -25.77749 -24.07626 -21.35039 -20.71999 -18.62252 -18.42735 -17.55030 -16.99616 -16.61952 -15.81275 -15.53565 -14.96239 -14.72328 -14.29029 -14.14973 -13.85041 -13.60318 -13.09313 -12.91658 -12.82930 -12.72298 -12.58534 -12.37024 -11.91377 -11.64842 -11.62194 -11.02535 -10.64710 -10.53181 -10.31871 -9.48598 -8.76973 -8.24358 -6.37498 -0.19423 0.47117 0.78436 0.83132 1.26017 1.37863 1.41179 1.49352 1.95927 2.40247 2.96181 3.08452 3.38656 3.76893 3.91254 4.05684 4.13266 4.31140 4.42907 4.55321 4.62858 4.70249 4.81004 4.95447 5.03578 5.14263 5.33055 5.43068 5.67085 6.09253 6.71209 6.96030 7.30461 8.85816 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.004822 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.277808 B = 5804.863366 C = 5958.744708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.093 3.907 10 C 0.079 3.921 11 C -0.271 4.271 12 S 0.155 5.845 13 C 0.040 3.960 14 C -0.010 4.010 15 H 0.105 0.895 16 C -0.122 4.122 17 C -0.052 4.052 18 S -0.313 6.313 19 C -0.053 4.053 20 N -0.498 5.498 21 H 0.268 0.732 22 H 0.002 0.998 23 H 0.020 0.980 24 H 0.181 0.819 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 -14.827 -1.224 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.053 3.947 10 C -0.051 4.051 11 C -0.410 4.410 12 S 0.409 5.591 13 C -0.240 4.240 14 C -0.035 4.035 15 H 0.123 0.877 16 C -0.162 4.162 17 C -0.200 4.200 18 S -0.086 6.086 19 C -0.202 4.202 20 N -0.213 5.213 21 H 0.076 0.924 22 H 0.021 0.979 23 H 0.038 0.962 24 H 0.198 0.802 25 H 0.116 0.884 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.201 -16.335 -1.799 21.079 hybrid contribution -1.044 2.908 0.612 3.150 sum 12.157 -13.427 -1.187 18.152 Atomic orbital electron populations 1.70060 1.07653 1.28226 1.50792 1.25899 0.95793 1.03058 0.94322 0.85460 0.78313 0.77924 0.79122 1.19691 1.20260 1.18863 1.21204 0.92815 0.91048 1.51706 0.93114 1.17642 0.91739 0.89067 0.96266 1.20691 0.99821 0.97649 0.86913 1.26948 1.06058 1.03803 1.04151 1.83011 1.42907 1.31352 1.01802 1.27479 0.98972 0.98260 0.99242 1.20538 0.96246 0.92050 0.94629 0.87676 1.22138 0.90401 0.98296 1.05368 1.24279 0.98836 0.91097 1.05762 1.88066 1.05886 1.37224 1.77468 1.24268 0.98850 0.92230 1.04894 1.66112 1.13677 1.08644 1.32865 0.92363 0.97935 0.96205 0.80180 0.88449 0.90312 0.85227 0.87728 0.88481 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -30.76 9.09 25.60 0.23 -30.53 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.09 5.12 5.39 29.10 0.16 5.27 16 10 C 0.08 3.62 5.93 41.52 0.25 3.87 16 11 C -0.27 -10.25 11.14 66.77 0.74 -9.50 16 12 S 0.16 4.30 22.08 -56.49 -1.25 3.05 16 13 C 0.04 1.27 5.63 88.52 0.50 1.77 16 14 C -0.01 -0.25 3.07 -11.33 -0.03 -0.28 16 15 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 16 C -0.12 -2.27 5.90 30.80 0.18 -2.09 16 17 C -0.05 -0.76 7.46 72.41 0.54 -0.22 16 18 S -0.31 -6.12 23.26 -56.49 -1.31 -7.43 16 19 C -0.05 -1.09 6.88 72.41 0.50 -0.59 16 20 N -0.50 -21.19 10.53 -179.41 -1.89 -23.08 16 21 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 22 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 23 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.18 6.31 8.06 -2.91 -0.02 6.28 16 25 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.57 7.24 -2.39 -0.02 1.55 16 27 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.93 7.24 -2.39 -0.02 1.92 16 30 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.21 281.54 2.52 -64.69 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.13 Total: 3.59 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.52 Total: -31.37 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.60 Total: -78.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.56 Total: -4.38 kcal Total: -67.21 2.52 -64.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.158 kcal (2) G-P(sol) polarization free energy of solvation -67.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds