Wall clock time and date at job start Mon Mar 30 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47184 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47115 * 120.00565 * 3 2 1 6 6 H 1.48501 * 109.46996 * 240.00629 * 3 2 1 7 7 C 1.40075 * 119.99834 * 180.28308 * 2 1 3 8 8 H 1.08005 * 119.99976 * 157.04305 * 7 2 1 9 9 C 1.40042 * 119.99931 * 337.03702 * 7 2 1 10 10 C 1.38578 * 126.25710 * 340.23050 * 9 7 2 11 11 N 1.30670 * 113.55211 * 179.78153 * 10 9 7 12 12 C 1.29518 * 117.63070 * 0.53521 * 11 10 9 13 13 C 1.50706 * 124.56241 * 179.71823 * 12 11 10 14 14 H 1.08998 * 109.39057 * 180.16838 * 13 12 11 15 15 C 1.52582 * 109.38872 * 60.47140 * 13 12 11 16 16 C 1.52584 * 110.72631 * 169.17871 * 15 13 12 17 17 C 1.53095 * 109.95891 * 70.67107 * 16 15 13 18 18 S 1.81749 * 108.83780 * 296.97684 * 17 16 15 19 19 C 1.53096 * 109.39159 * 299.97228 * 13 12 11 20 20 S 1.70886 * 110.87846 * 359.69490 * 12 11 10 21 21 H 0.97002 * 120.00182 * 173.88912 * 1 2 3 22 22 H 1.08007 * 123.22625 * 359.97438 * 10 9 7 23 23 H 1.09004 * 109.22263 * 289.49610 * 15 13 12 24 24 H 1.08998 * 109.23232 * 48.85301 * 15 13 12 25 25 H 1.09000 * 109.38889 * 310.52104 * 16 15 13 26 26 H 1.09001 * 109.30808 * 190.77336 * 16 15 13 27 27 H 1.08996 * 109.57431 * 177.17480 * 17 16 15 28 28 H 1.08995 * 109.57499 * 56.77859 * 17 16 15 29 29 H 1.09000 * 109.57492 * 302.98106 * 19 13 12 30 30 H 1.08999 * 109.57336 * 63.36651 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0964 1.6964 1.2124 6 1 3.0962 1.6965 -1.2126 7 6 2.0090 -1.2131 -0.0060 8 1 3.0248 -1.2484 -0.3710 9 6 1.3919 -2.3801 0.4614 10 6 0.2839 -2.4455 1.2911 11 7 -0.0884 -3.6666 1.5699 12 6 0.6052 -4.6363 1.0638 13 6 0.3197 -6.0991 1.2874 14 1 1.0557 -6.6976 0.7506 15 6 -1.0758 -6.4283 0.7654 16 6 -1.2966 -7.9377 0.7293 17 6 -1.4165 -8.4825 2.1549 18 16 0.1516 -8.1939 3.0273 19 6 0.4048 -6.4107 2.7838 20 16 1.8873 -4.0339 0.1081 21 1 -0.4850 -0.8353 -0.0894 22 1 -0.2252 -1.5709 1.6686 23 1 -1.8200 -5.9722 1.4182 24 1 -1.1869 -6.0251 -0.2412 25 1 -0.4538 -8.4148 0.2292 26 1 -2.2131 -8.1548 0.1805 27 1 -1.6239 -9.5520 2.1209 28 1 -2.2241 -7.9682 2.6757 29 1 1.3873 -6.1266 3.1607 30 1 -0.3674 -5.8561 3.3169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260868648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:04 Heat of formation + Delta-G solvation = -3.304866 kcal Electronic energy + Delta-G solvation = -14351.859823 eV Core-core repulsion = 11977.078527 eV Total energy + Delta-G solvation = -2374.781296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.22234 -36.46651 -34.37409 -31.72766 -28.84259 -26.98932 -25.57782 -23.55990 -21.94901 -20.66199 -19.10404 -17.49002 -16.69157 -16.01067 -14.90985 -14.43978 -14.21391 -14.17467 -13.43438 -13.21019 -13.10940 -12.71750 -12.45610 -12.30789 -11.91623 -11.36490 -11.19181 -11.12188 -10.64642 -10.57976 -10.43033 -10.24172 -9.93716 -9.53437 -9.45972 -8.24682 -8.12975 -7.63948 -7.57859 -7.41733 -4.75901 1.97232 2.26904 2.69451 2.95324 2.99925 3.10617 3.20359 3.43804 3.76317 4.14137 4.72737 4.85497 4.95596 5.14471 5.32515 5.44459 5.50795 5.67502 5.82533 5.89976 5.94212 6.17431 6.22872 6.47005 6.62373 6.81716 6.85391 7.24190 7.46967 7.62176 8.08913 8.22754 9.47976 9.62263 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.053815 B = 0.004981 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.175684 B = 5620.100893 C = 5700.283857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.035 3.965 3 Si 1.076 2.924 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.427 4.427 8 H 0.088 0.912 9 C 0.011 3.989 10 C -0.177 4.177 11 N -0.407 5.407 12 C -0.128 4.128 13 C 0.031 3.969 14 H 0.077 0.923 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.076 4.076 18 S -0.294 6.294 19 C -0.053 4.053 20 S -0.054 6.054 21 H 0.310 0.690 22 H 0.149 0.851 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -7.531 0.353 7.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.193 4.193 3 Si 0.897 3.103 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.106 0.894 9 C -0.110 4.110 10 C -0.331 4.331 11 N -0.117 5.117 12 C -0.398 4.398 13 C 0.007 3.993 14 H 0.095 0.905 15 C -0.152 4.152 16 C -0.160 4.160 17 C -0.224 4.224 18 S -0.066 6.066 19 C -0.202 4.202 20 S 0.198 5.802 21 H 0.125 0.875 22 H 0.166 0.834 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.147 -7.456 0.810 7.501 hybrid contribution -1.008 -0.043 -0.334 1.062 sum -0.860 -7.498 0.476 7.562 Atomic orbital electron populations 1.70411 1.08243 1.35628 1.24025 1.27450 0.95696 1.04386 0.91779 0.83469 0.75580 0.72785 0.78483 1.19232 1.19461 1.19564 1.20154 1.01367 0.92123 1.32910 0.89359 1.23258 0.97027 0.94005 0.96760 1.21586 1.06017 0.93019 1.12511 1.65061 1.27398 0.99721 1.19556 1.24636 1.02655 0.96685 1.15857 1.19318 0.96877 0.89915 0.93193 0.90466 1.21506 0.97096 0.94071 1.02485 1.21774 1.02539 0.96747 0.94935 1.23391 0.96600 1.04235 0.98213 1.86641 1.31820 1.14656 1.73514 1.23580 1.05857 0.90884 0.99927 1.83172 1.38438 1.03673 1.54906 0.87479 0.83375 0.91498 0.91243 0.90830 0.91155 0.88351 0.90066 0.88255 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.91 12.55 55.56 0.70 -18.21 16 2 C 0.04 0.82 5.26 -17.28 -0.09 0.73 16 3 Si 1.08 19.41 29.99 -169.99 -5.10 14.31 16 4 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 6 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 7 C -0.43 -10.56 9.33 -38.22 -0.36 -10.92 16 8 H 0.09 2.07 7.94 -52.48 -0.42 1.65 16 9 C 0.01 0.29 5.94 -38.78 -0.23 0.06 16 10 C -0.18 -4.65 9.54 -17.92 -0.17 -4.82 16 11 N -0.41 -10.12 10.46 -10.84 -0.11 -10.23 16 12 C -0.13 -2.89 5.84 -13.25 -0.08 -2.97 16 13 C 0.03 0.56 2.46 -91.93 -0.23 0.34 16 14 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 15 C -0.11 -1.84 4.90 -27.16 -0.13 -1.97 16 16 C -0.12 -1.54 5.75 -26.90 -0.15 -1.70 16 17 C -0.08 -0.94 6.46 37.21 0.24 -0.70 16 18 S -0.29 -4.42 22.33 -107.50 -2.40 -6.82 16 19 C -0.05 -0.92 5.70 37.21 0.21 -0.71 16 20 S -0.05 -1.25 23.11 -107.50 -2.48 -3.74 16 21 H 0.31 8.06 6.24 -40.82 -0.25 7.80 16 22 H 0.15 3.98 6.65 -52.48 -0.35 3.63 16 23 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 24 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 25 H 0.07 0.93 8.05 -51.93 -0.42 0.52 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 274.71 15.07 4.14 4.14 Total: -1.00 -26.16 274.71 -9.85 -36.01 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.60 Total: 7.21 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.99 Total: -22.67 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: 0.58 Total: -28.45 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.10 Total: 14.31 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -4.88 Total: -10.56 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.16 -9.85 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.710 kcal (2) G-P(sol) polarization free energy of solvation -26.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds