Wall clock time and date at job start Mon Mar 30 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48502 * 109.47184 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47115 * 120.00565 * 3 2 1 6 6 H 1.48501 * 109.46996 * 240.00629 * 3 2 1 7 7 C 1.40075 * 119.99834 * 180.28308 * 2 1 3 8 8 H 1.08005 * 119.99976 * 157.04305 * 7 2 1 9 9 C 1.40042 * 119.99931 * 337.03702 * 7 2 1 10 10 C 1.38578 * 126.25710 * 340.23050 * 9 7 2 11 11 N 1.30670 * 113.55211 * 179.78153 * 10 9 7 12 12 C 1.29518 * 117.63070 * 0.53521 * 11 10 9 13 13 C 1.50706 * 124.56241 * 179.71823 * 12 11 10 14 14 H 1.08998 * 109.39057 * 180.16838 * 13 12 11 15 15 C 1.52582 * 109.38872 * 60.47140 * 13 12 11 16 16 C 1.52584 * 110.72631 * 169.17871 * 15 13 12 17 17 C 1.53095 * 109.95891 * 70.67107 * 16 15 13 18 18 S 1.81749 * 108.83780 * 296.97684 * 17 16 15 19 19 C 1.53096 * 109.39159 * 299.97228 * 13 12 11 20 20 S 1.70886 * 110.87846 * 359.69490 * 12 11 10 21 21 H 0.97002 * 120.00182 * 173.88912 * 1 2 3 22 22 H 1.08007 * 123.22625 * 359.97438 * 10 9 7 23 23 H 1.09004 * 109.22263 * 289.49610 * 15 13 12 24 24 H 1.08998 * 109.23232 * 48.85301 * 15 13 12 25 25 H 1.09000 * 109.38889 * 310.52104 * 16 15 13 26 26 H 1.09001 * 109.30808 * 190.77336 * 16 15 13 27 27 H 1.08996 * 109.57431 * 177.17480 * 17 16 15 28 28 H 1.08995 * 109.57499 * 56.77859 * 17 16 15 29 29 H 1.09000 * 109.57492 * 302.98106 * 19 13 12 30 30 H 1.08999 * 109.57336 * 63.36651 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0964 1.6964 1.2124 6 1 3.0962 1.6965 -1.2126 7 6 2.0090 -1.2131 -0.0060 8 1 3.0248 -1.2484 -0.3710 9 6 1.3919 -2.3801 0.4614 10 6 0.2839 -2.4455 1.2911 11 7 -0.0884 -3.6666 1.5699 12 6 0.6052 -4.6363 1.0638 13 6 0.3197 -6.0991 1.2874 14 1 1.0557 -6.6976 0.7506 15 6 -1.0758 -6.4283 0.7654 16 6 -1.2966 -7.9377 0.7293 17 6 -1.4165 -8.4825 2.1549 18 16 0.1516 -8.1939 3.0273 19 6 0.4048 -6.4107 2.7838 20 16 1.8873 -4.0339 0.1081 21 1 -0.4850 -0.8353 -0.0894 22 1 -0.2252 -1.5709 1.6686 23 1 -1.8200 -5.9722 1.4182 24 1 -1.1869 -6.0251 -0.2412 25 1 -0.4538 -8.4148 0.2292 26 1 -2.2131 -8.1548 0.1805 27 1 -1.6239 -9.5520 2.1209 28 1 -2.2241 -7.9682 2.6757 29 1 1.3873 -6.1266 3.1607 30 1 -0.3674 -5.8561 3.3169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:03 Heat of formation + Delta-G solvation = -16.647383 kcal Electronic energy + Delta-G solvation = -14352.438398 eV Core-core repulsion = 11977.078527 eV Total energy + Delta-G solvation = -2375.359871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04464 -37.93969 -36.14594 -33.06097 -30.69553 -28.28450 -27.31991 -25.31348 -23.40176 -22.14896 -20.88008 -19.22588 -18.37808 -17.49890 -16.30395 -15.90696 -15.85325 -15.51158 -15.05837 -14.62051 -14.55675 -14.31235 -14.19273 -13.73700 -13.53066 -12.91839 -12.44021 -12.41672 -12.15437 -11.97298 -11.92564 -11.84845 -11.59241 -11.17622 -10.75781 -10.14588 -10.04707 -9.52228 -9.39334 -8.72640 -6.69524 0.39595 0.77415 1.08392 1.44902 1.50276 1.58561 1.62309 1.81122 2.23107 2.31826 2.83952 3.63020 3.73334 3.82559 4.02480 4.09146 4.21272 4.35819 4.54190 4.66229 4.76941 4.86363 4.89803 4.98389 5.04245 5.12563 5.31155 5.32215 5.55244 5.68195 6.12740 6.37789 7.53937 7.71221 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.053815 B = 0.004981 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.175684 B = 5620.100893 C = 5700.283857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.005 3.995 3 Si 1.128 2.872 4 H -0.268 1.268 5 H -0.259 1.259 6 H -0.247 1.247 7 C -0.450 4.450 8 H 0.097 0.903 9 C -0.018 4.018 10 C -0.205 4.205 11 N -0.427 5.427 12 C -0.109 4.109 13 C 0.029 3.971 14 H 0.086 0.914 15 C -0.108 4.108 16 C -0.112 4.112 17 C -0.071 4.071 18 S -0.290 6.290 19 C -0.051 4.051 20 S -0.037 6.037 21 H 0.293 0.707 22 H 0.131 0.869 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -8.988 -0.024 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.218 4.218 3 Si 0.941 3.059 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.171 1.171 7 C -0.487 4.487 8 H 0.115 0.885 9 C -0.139 4.139 10 C -0.356 4.356 11 N -0.138 5.138 12 C -0.382 4.382 13 C 0.005 3.995 14 H 0.104 0.896 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.219 4.219 18 S -0.063 6.063 19 C -0.201 4.201 20 S 0.216 5.784 21 H 0.107 0.893 22 H 0.149 0.851 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.148 0.852 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.451 -8.910 0.430 8.932 hybrid contribution -1.147 0.210 -0.208 1.184 sum -0.695 -8.700 0.222 8.730 Atomic orbital electron populations 1.70517 1.09179 1.34489 1.25987 1.29015 0.95556 1.07421 0.89776 0.82890 0.74698 0.68478 0.79796 1.19185 1.18385 1.17059 1.20480 1.01924 0.92685 1.33613 0.88452 1.23538 0.97437 0.95643 0.97293 1.21422 1.07137 0.93153 1.13931 1.65075 1.28333 0.99743 1.20677 1.25578 1.01048 0.98370 1.13198 1.19526 0.98559 0.86976 0.94411 0.89599 1.21448 0.95064 0.97062 1.01149 1.21715 1.04234 0.93438 0.95666 1.23551 0.94807 1.06204 0.97353 1.86657 1.33893 1.11450 1.74271 1.23315 1.04861 0.93328 0.98567 1.82985 1.38371 1.02180 1.54853 0.89343 0.85130 0.92799 0.92452 0.90150 0.88357 0.85245 0.89592 0.89338 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.99 12.55 21.86 0.27 -39.72 16 2 C 0.00 0.24 5.26 85.28 0.45 0.68 16 3 Si 1.13 38.37 29.99 68.60 2.06 40.43 16 4 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 5 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 6 H -0.25 -7.46 7.11 99.48 0.71 -6.75 16 7 C -0.45 -22.57 9.33 23.15 0.22 -22.35 16 8 H 0.10 4.57 7.94 -2.91 -0.02 4.54 16 9 C -0.02 -0.93 5.94 22.79 0.14 -0.79 16 10 C -0.20 -11.19 9.54 84.95 0.81 -10.38 16 11 N -0.43 -21.87 10.46 -188.22 -1.97 -23.84 16 12 C -0.11 -4.95 5.84 88.45 0.52 -4.44 16 13 C 0.03 1.04 2.46 -11.64 -0.03 1.01 16 14 H 0.09 2.93 8.02 -2.39 -0.02 2.91 16 15 C -0.11 -3.37 4.90 30.32 0.15 -3.22 16 16 C -0.11 -2.46 5.75 30.49 0.18 -2.28 16 17 C -0.07 -1.50 6.46 72.01 0.46 -1.04 16 18 S -0.29 -8.04 22.33 -56.49 -1.26 -9.31 16 19 C -0.05 -1.73 5.70 72.01 0.41 -1.32 16 20 S -0.04 -1.70 23.11 -56.49 -1.31 -3.01 16 21 H 0.29 16.00 6.24 -92.71 -0.58 15.43 16 22 H 0.13 7.45 6.65 -2.91 -0.02 7.44 16 23 H 0.05 1.81 8.08 -2.38 -0.02 1.80 16 24 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 25 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -57.79 274.71 2.42 -55.37 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 1.33 Total: 24.20 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 3.30 Total: -44.13 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -1.69 Total: -63.56 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.06 Total: 40.43 kcal Atomic # 16 Polarization: -9.74 SS G_CDS: -2.57 Total: -12.31 kcal Total: -57.79 2.42 -55.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.720 kcal (2) G-P(sol) polarization free energy of solvation -57.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds