Wall clock time and date at job start Mon Mar 30 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86797 * 119.99468 * 2 1 4 4 H 1.48500 * 109.47256 * 240.00181 * 3 2 1 5 5 H 1.48498 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47014 * 120.00426 * 3 2 1 7 7 C 1.39719 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99899 * 186.19581 * 7 2 1 9 9 C 1.41152 * 120.00030 * 6.19215 * 7 2 1 10 10 C 1.37702 * 122.86086 * 174.08979 * 9 7 2 11 11 S 1.70989 * 108.83720 * 179.97438 * 10 9 7 12 12 C 1.75893 * 90.81126 * 0.02562 * 11 10 9 13 13 C 1.50704 * 124.99182 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46941 * 270.02207 * 13 12 11 15 15 H 1.09001 * 110.76152 * 57.04707 * 14 13 12 16 16 C 1.55137 * 110.85488 * 180.76358 * 14 13 12 17 17 C 1.53860 * 106.89981 * 160.30032 * 16 14 13 18 18 C 1.54283 * 108.92143 * 312.74078 * 17 16 14 19 19 S 1.83095 * 104.64816 * 27.95935 * 18 17 16 20 20 N 1.28788 * 110.01379 * 0.22709 * 12 11 10 21 21 H 0.96995 * 120.00264 * 359.97438 * 1 2 3 22 22 H 1.07998 * 125.57826 * 359.97438 * 10 9 7 23 23 H 1.09002 * 109.46886 * 150.02334 * 13 12 11 24 24 H 1.08999 * 109.46805 * 30.02131 * 13 12 11 25 25 H 1.09002 * 109.97807 * 279.65636 * 16 14 13 26 26 H 1.08993 * 109.97700 * 40.93419 * 16 14 13 27 27 H 1.09003 * 109.60903 * 192.83025 * 17 16 14 28 28 H 1.08994 * 109.61669 * 72.66022 * 17 16 14 29 29 H 1.08992 * 110.40391 * 269.16228 * 18 17 16 30 30 H 1.09001 * 110.49644 * 146.79400 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0978 1.6966 -1.2125 5 1 1.2790 2.7465 0.0006 6 1 3.0979 1.6965 1.2125 7 6 2.0089 -1.2100 -0.0005 8 1 3.0842 -1.2127 0.1004 9 6 1.3094 -2.4288 -0.1329 10 6 1.9437 -3.6444 -0.2596 11 16 0.7617 -4.8726 -0.3942 12 6 -0.5263 -3.6809 -0.2732 13 6 -1.9999 -3.9941 -0.3127 14 6 -2.4923 -3.9484 -1.7606 15 1 -1.9257 -4.6405 -2.3835 16 6 -4.0126 -4.2479 -1.8366 17 6 -4.5087 -3.7039 -3.1876 18 6 -3.9618 -2.2745 -3.3826 19 16 -2.3993 -2.2424 -2.4287 20 7 -0.0250 -2.5009 -0.1512 21 1 -0.4850 0.8400 0.0004 22 1 3.0128 -3.7970 -0.2720 23 1 -2.5438 -3.2581 0.2794 24 1 -2.1710 -4.9892 0.0980 25 1 -4.1835 -5.3231 -1.7829 26 1 -4.5322 -3.7468 -1.0200 27 1 -5.5985 -3.6828 -3.1956 28 1 -4.1518 -4.3451 -3.9936 29 1 -4.6643 -1.5415 -2.9860 30 1 -3.7670 -2.0809 -4.4374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:05 Heat of formation + Delta-G solvation = 5.619855 kcal Electronic energy + Delta-G solvation = -14481.403072 eV Core-core repulsion = 12107.008781 eV Total energy + Delta-G solvation = -2374.394291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72017 -37.36077 -35.23884 -33.59079 -30.63325 -27.98589 -27.42094 -24.84595 -22.86872 -21.58790 -20.48669 -19.57004 -17.57144 -17.03291 -16.93856 -16.43758 -15.63581 -15.10748 -14.95679 -14.49016 -14.23138 -13.95833 -13.46704 -13.32892 -13.08366 -12.80489 -12.60088 -12.40359 -12.27757 -12.18616 -11.87603 -11.64794 -11.55351 -11.11300 -10.42810 -9.81726 -9.79464 -9.22087 -8.49019 -8.41196 -6.35344 0.45878 1.02975 1.17419 1.35292 1.41063 1.47883 1.73005 1.79448 2.23624 2.42067 3.43170 3.50321 3.82004 3.91369 4.05363 4.18759 4.31816 4.43137 4.61512 4.74429 4.81485 4.96980 5.01914 5.03989 5.07918 5.12617 5.29658 5.36301 5.56891 6.17334 6.57901 6.90812 7.74670 8.44906 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.008226 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.320167 B = 3403.164899 C = 4478.714849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.474 4.474 8 H 0.077 0.923 9 C 0.197 3.803 10 C -0.497 4.497 11 S -0.001 6.001 12 C 0.060 3.940 13 C -0.014 4.014 14 C -0.021 4.021 15 H 0.092 0.908 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.080 4.080 19 S -0.342 6.342 20 N -0.415 5.415 21 H 0.278 0.722 22 H 0.129 0.871 23 H 0.088 0.912 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 -6.282 -4.435 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.508 4.508 8 H 0.095 0.905 9 C 0.075 3.925 10 C -0.635 4.635 11 S 0.247 5.753 12 C -0.224 4.224 13 C -0.056 4.056 14 C -0.151 4.151 15 H 0.110 0.890 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.228 4.228 19 S -0.117 6.117 20 N -0.129 5.129 21 H 0.089 0.911 22 H 0.147 0.853 23 H 0.106 0.894 24 H 0.140 0.860 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.590 -5.840 -4.362 13.692 hybrid contribution 0.904 0.870 -0.064 1.256 sum -10.686 -4.970 -4.425 12.589 Atomic orbital electron populations 1.70209 1.08050 1.29135 1.30896 1.26825 0.95911 1.04038 0.92472 0.85244 0.78654 0.75887 0.79786 1.18957 1.18967 1.18284 1.19214 0.94534 0.90065 1.46952 0.90504 1.18463 0.86763 0.93844 0.93476 1.25248 1.01760 0.95958 1.40541 1.82060 1.00588 1.15184 1.77423 1.28572 1.00409 0.90250 1.03211 1.20202 0.85532 1.04014 0.95859 1.24023 1.00988 0.92844 0.97211 0.88996 1.22679 0.89750 1.04180 0.98693 1.22276 1.03028 0.92822 0.97597 1.24113 0.95092 1.01693 1.01875 1.89412 1.33868 1.23694 1.64709 1.67351 1.11325 1.20985 1.13191 0.91131 0.85273 0.89385 0.86001 0.86709 0.89807 0.87383 0.90190 0.88890 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -43.01 11.72 21.79 0.26 -42.76 16 2 C 0.03 1.57 5.49 85.17 0.47 2.03 16 3 Si 0.98 41.47 29.56 68.60 2.03 43.50 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.47 -28.14 9.23 23.34 0.22 -27.93 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.20 11.73 6.46 39.46 0.25 11.98 16 10 C -0.50 -27.29 10.98 67.69 0.74 -26.55 16 11 S 0.00 -0.03 23.16 -56.49 -1.31 -1.34 16 12 C 0.06 2.78 6.37 88.56 0.56 3.34 16 13 C -0.01 -0.46 5.41 29.85 0.16 -0.29 16 14 C -0.02 -0.62 3.23 31.33 0.10 -0.52 16 15 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 16 C -0.11 -2.18 5.89 31.62 0.19 -1.99 16 17 C -0.12 -2.06 6.39 31.32 0.20 -1.86 16 18 C -0.08 -1.95 7.34 72.42 0.53 -1.41 16 19 S -0.34 -13.08 22.14 -56.49 -1.25 -14.33 16 20 N -0.41 -23.16 8.33 -180.35 -1.50 -24.67 16 21 H 0.28 14.49 8.30 -92.71 -0.77 13.72 16 22 H 0.13 6.95 8.06 -2.91 -0.02 6.93 16 23 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 24 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.59 8.07 -2.39 -0.02 1.57 16 27 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.66 280.44 2.78 -68.88 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.13 Total: 13.90 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 3.43 Total: -43.19 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -1.25 Total: -67.42 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: -13.11 SS G_CDS: -2.56 Total: -15.67 kcal Total: -71.66 2.78 -68.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.502 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds