Wall clock time and date at job start Mon Mar 30 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31023 * 1 3 3 Si 1.86798 * 119.99731 * 2 1 4 4 H 1.48498 * 109.47534 * 269.99986 * 3 2 1 5 5 H 1.48501 * 109.47180 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.47166 * 149.99802 * 3 2 1 7 7 C 1.39716 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99822 * 186.16046 * 7 2 1 9 9 C 1.41156 * 120.00223 * 6.15168 * 7 2 1 10 10 C 1.37697 * 122.86331 * 173.96946 * 9 7 2 11 11 S 1.70995 * 108.83730 * 179.76812 * 10 9 7 12 12 C 1.75893 * 90.81044 * 0.34333 * 11 10 9 13 13 C 1.50702 * 124.99235 * 179.91307 * 12 11 10 14 14 C 1.52999 * 109.47015 * 269.69656 * 13 12 11 15 15 H 1.08994 * 110.36070 * 304.13203 * 14 13 12 16 16 C 1.54276 * 110.40096 * 181.68159 * 14 13 12 17 17 C 1.53853 * 108.92521 * 213.25665 * 16 14 13 18 18 C 1.55139 * 106.90319 * 47.25219 * 17 16 14 19 19 S 1.83096 * 110.40156 * 66.45423 * 14 13 12 20 20 N 1.28794 * 110.01369 * 359.65028 * 12 11 10 21 21 H 0.96998 * 120.00337 * 0.02562 * 1 2 3 22 22 H 1.07999 * 125.58289 * 0.02562 * 10 9 7 23 23 H 1.09002 * 109.47044 * 29.69525 * 13 12 11 24 24 H 1.08993 * 109.47024 * 149.69662 * 13 12 11 25 25 H 1.09000 * 109.60632 * 333.17091 * 16 14 13 26 26 H 1.08994 * 109.60722 * 93.33426 * 16 14 13 27 27 H 1.09008 * 109.97549 * 287.89170 * 17 16 14 28 28 H 1.09003 * 109.97730 * 166.62205 * 17 16 14 29 29 H 1.08997 * 110.85432 * 199.70503 * 18 17 16 30 30 H 1.09001 * 110.85043 * 76.06294 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4917 2.0465 -1.4000 5 1 1.4416 2.6527 0.7001 6 1 3.5417 1.4403 0.7001 7 6 2.0089 -1.2100 -0.0005 8 1 3.0842 -1.2126 0.0998 9 6 1.3093 -2.4289 -0.1321 10 6 1.9435 -3.6443 -0.2611 11 16 0.7613 -4.8732 -0.3879 12 6 -0.5266 -3.6810 -0.2706 13 6 -2.0002 -3.9943 -0.3075 14 6 -2.4957 -3.9465 -1.7542 15 1 -2.2665 -2.9794 -2.2018 16 6 -4.0123 -4.2231 -1.8127 17 6 -4.3330 -4.9719 -3.1179 18 6 -3.2979 -6.1205 -3.2450 19 16 -1.7405 -5.2974 -2.7325 20 7 -0.0252 -2.5016 -0.1429 21 1 -0.4850 0.8400 -0.0004 22 1 3.0126 -3.7968 -0.2754 23 1 -2.1704 -4.9901 0.1021 24 1 -2.5429 -3.2594 0.2869 25 1 -4.3059 -4.8339 -0.9590 26 1 -4.5574 -3.2795 -1.7889 27 1 -4.2438 -4.2946 -3.9674 28 1 -5.3417 -5.3827 -3.0734 29 1 -3.2312 -6.4705 -4.2751 30 1 -3.5437 -6.9406 -2.5704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260905456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:07 Heat of formation + Delta-G solvation = 2.187362 kcal Electronic energy + Delta-G solvation = -14358.521599 eV Core-core repulsion = 11983.978464 eV Total energy + Delta-G solvation = -2374.543135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.77304 -37.44226 -35.26586 -33.58073 -30.68043 -28.00086 -27.45443 -24.89346 -22.89554 -21.65115 -20.49458 -19.61668 -17.56851 -17.13920 -16.97383 -16.47710 -15.64909 -15.16954 -14.81290 -14.63195 -14.46554 -13.78117 -13.45267 -13.26374 -13.18428 -12.93677 -12.66066 -12.31722 -12.30387 -12.14341 -11.96153 -11.69471 -11.54249 -11.16016 -10.64696 -9.89277 -9.84550 -9.21417 -8.62611 -8.47565 -6.39349 0.41702 0.93096 1.17048 1.35446 1.39011 1.49897 1.57154 1.85777 2.22612 2.35289 3.40660 3.47468 3.79781 3.83858 4.04248 4.15540 4.26561 4.43108 4.67980 4.75031 4.79443 4.93337 4.99395 5.02548 5.04851 5.11666 5.26800 5.34443 5.53062 6.15422 6.54201 6.87567 7.67978 8.42369 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.029774 B = 0.006440 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.187718 B = 4346.777985 C = 4935.062342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.029 3.971 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.476 4.476 8 H 0.078 0.922 9 C 0.195 3.805 10 C -0.497 4.497 11 S 0.035 5.965 12 C 0.060 3.940 13 C -0.014 4.014 14 C -0.018 4.018 15 H 0.071 0.929 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.065 4.065 19 S -0.350 6.350 20 N -0.441 5.441 21 H 0.281 0.719 22 H 0.131 0.869 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 -7.049 -4.002 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.191 4.191 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.510 4.510 8 H 0.097 0.903 9 C 0.073 3.927 10 C -0.635 4.635 11 S 0.284 5.716 12 C -0.223 4.223 13 C -0.057 4.057 14 C -0.149 4.149 15 H 0.089 0.911 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.213 4.213 19 S -0.124 6.124 20 N -0.156 5.156 21 H 0.091 0.909 22 H 0.149 0.851 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.419 -7.774 -4.276 14.461 hybrid contribution 0.565 1.868 0.316 1.977 sum -10.854 -5.905 -3.961 12.975 Atomic orbital electron populations 1.70188 1.08453 1.29326 1.32639 1.26889 0.95916 1.04327 0.91931 0.85098 0.78878 0.75625 0.79379 1.18898 1.18629 1.18299 1.19277 0.94642 0.90029 1.47095 0.90342 1.18431 0.86619 0.93969 0.93709 1.25455 1.02223 0.96523 1.39341 1.82356 0.99515 1.14292 1.75402 1.28496 1.00670 0.90375 1.02793 1.20350 0.85616 1.03714 0.96017 1.23655 0.98408 0.97414 0.95391 0.91051 1.22443 0.90267 1.02976 1.00102 1.22549 1.00266 0.95637 0.97294 1.24408 0.91327 1.00259 1.05332 1.88434 1.19298 1.36526 1.68164 1.67394 1.11895 1.21358 1.14908 0.90891 0.85078 0.87595 0.88191 0.88601 0.88636 0.90973 0.86656 0.87171 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.56 11.72 21.79 0.26 -43.30 16 2 C 0.03 1.55 5.49 85.17 0.47 2.02 16 3 Si 0.99 40.58 29.56 68.60 2.03 42.61 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 7 C -0.48 -28.24 9.23 23.34 0.22 -28.03 16 8 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 9 C 0.20 11.76 6.46 39.46 0.25 12.01 16 10 C -0.50 -27.75 10.98 67.69 0.74 -27.01 16 11 S 0.03 1.62 22.46 -56.49 -1.27 0.35 16 12 C 0.06 2.84 6.39 88.55 0.57 3.41 16 13 C -0.01 -0.49 5.23 29.85 0.16 -0.34 16 14 C -0.02 -0.57 3.26 31.03 0.10 -0.47 16 15 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 16 C -0.12 -2.35 5.94 31.31 0.19 -2.16 16 17 C -0.12 -1.89 6.46 31.62 0.20 -1.69 16 18 C -0.07 -1.24 7.38 72.72 0.54 -0.71 16 19 S -0.35 -11.24 21.57 -56.49 -1.22 -12.46 16 20 N -0.44 -24.98 8.49 -180.35 -1.53 -26.51 16 21 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 22 H 0.13 7.14 8.06 -2.91 -0.02 7.11 16 23 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 24 H 0.10 3.35 8.14 -2.39 -0.02 3.34 16 25 H 0.10 1.56 7.86 -2.39 -0.02 1.54 16 26 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.89 279.13 2.83 -68.06 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.13 Total: 14.20 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 3.43 Total: -42.96 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -1.28 Total: -69.81 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -2.49 Total: -12.10 kcal Total: -70.89 2.83 -68.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260905456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.247 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds