Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86793 * 120.00367 * 2 1 4 4 H 1.48506 * 109.46998 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47603 * 119.99582 * 3 2 1 6 6 H 1.48498 * 109.47318 * 239.99475 * 3 2 1 7 7 C 1.39722 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00575 * 2.94712 * 7 2 1 9 9 C 1.41158 * 119.99774 * 182.94235 * 7 2 1 10 10 C 1.37706 * 122.86341 * 186.62488 * 9 7 2 11 11 S 1.70986 * 108.84026 * 179.97438 * 10 9 7 12 12 C 1.75893 * 90.81100 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.99242 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.38855 * 180.17092 * 13 12 11 15 15 C 1.52584 * 109.38856 * 60.47497 * 13 12 11 16 16 C 1.52579 * 110.72794 * 169.17675 * 15 13 12 17 17 C 1.53096 * 109.95578 * 70.66842 * 16 15 13 18 18 S 1.81745 * 108.84517 * 296.97664 * 17 16 15 19 19 C 1.53095 * 109.39165 * 299.97862 * 13 12 11 20 20 N 1.28796 * 110.01702 * 359.76825 * 12 11 10 21 21 H 0.97002 * 120.00100 * 174.81524 * 1 2 3 22 22 H 1.08003 * 125.57645 * 359.95576 * 10 9 7 23 23 H 1.09005 * 109.22089 * 289.49623 * 15 13 12 24 24 H 1.08994 * 109.22701 * 48.84968 * 15 13 12 25 25 H 1.08999 * 109.38582 * 310.52379 * 16 15 13 26 26 H 1.08999 * 109.31227 * 190.77040 * 16 15 13 27 27 H 1.09001 * 109.57380 * 177.16582 * 17 16 15 28 28 H 1.09003 * 109.57639 * 56.79065 * 17 16 15 29 29 H 1.08998 * 109.57306 * 302.97957 * 19 13 12 30 30 H 1.09001 * 109.57765 * 63.36635 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 1.2793 2.7464 -0.0006 5 1 3.0980 1.6964 1.2125 6 1 3.0981 1.6962 -1.2124 7 6 2.0087 -1.2101 0.0005 8 1 1.4698 -2.1448 -0.0471 9 6 3.4189 -1.2109 0.0633 10 6 4.1720 -2.3566 -0.0657 11 16 5.8269 -1.9472 0.0654 12 6 5.4156 -0.2514 0.2867 13 6 6.4127 0.8606 0.4874 14 1 5.8824 1.8061 0.6006 15 6 7.3332 0.9409 -0.7269 16 6 8.1757 2.2122 -0.6828 17 6 9.2215 2.1076 0.4304 18 16 8.3663 1.9791 2.0290 19 6 7.2349 0.5846 1.7490 20 7 4.1374 -0.0989 0.2466 21 1 -0.4850 -0.8366 -0.0759 22 1 3.7811 -3.3510 -0.2236 23 1 7.9929 0.0731 -0.7351 24 1 6.7303 0.9411 -1.6349 25 1 7.5288 3.0685 -0.4923 26 1 8.6788 2.3446 -1.6407 27 1 9.8519 2.9968 0.4239 28 1 9.8357 1.2211 0.2725 29 1 6.5673 0.4786 2.6040 30 1 7.8103 -0.3317 1.6167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260954989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = 4.653447 kcal Electronic energy + Delta-G solvation = -14665.725109 eV Core-core repulsion = 12291.288912 eV Total energy + Delta-G solvation = -2374.436198 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.70502 -36.86419 -33.48918 -32.13557 -29.06871 -27.28346 -25.90430 -24.11140 -21.69604 -20.34965 -19.25698 -18.29705 -16.80582 -15.95820 -15.20771 -14.79684 -14.50964 -13.85510 -13.66254 -13.45970 -13.06366 -12.97951 -12.52030 -12.22271 -12.06814 -11.45508 -11.34321 -10.95316 -10.89779 -10.74963 -10.54589 -10.10905 -9.77636 -9.60846 -9.27427 -8.41809 -8.12648 -7.78137 -7.64303 -7.24424 -4.59319 1.69053 1.86023 2.41751 2.49065 3.31016 3.39058 3.51393 3.91113 4.04850 4.31903 4.51912 4.65073 4.77141 4.90213 4.98839 5.18149 5.27029 5.39876 5.48641 5.62212 5.68846 5.84233 5.95092 6.11942 6.25681 6.40291 6.85883 7.12634 7.54069 8.01878 8.12536 8.66784 8.98142 10.08895 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.007701 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.701600 B = 3635.237303 C = 4206.902572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.042 3.958 3 Si 1.128 2.872 4 H -0.317 1.317 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.477 4.477 8 H 0.081 0.919 9 C 0.209 3.791 10 C -0.452 4.452 11 S 0.016 5.984 12 C 0.081 3.919 13 C -0.009 4.009 14 H 0.106 0.894 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.082 4.082 18 S -0.266 6.266 19 C -0.069 4.069 20 N -0.477 5.477 21 H 0.282 0.718 22 H 0.142 0.858 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.069 3.847 -0.256 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.960 3.040 4 H -0.249 1.249 5 H -0.201 1.201 6 H -0.216 1.216 7 C -0.512 4.512 8 H 0.099 0.901 9 C 0.089 3.911 10 C -0.590 4.590 11 S 0.265 5.735 12 C -0.202 4.202 13 C -0.034 4.034 14 H 0.124 0.876 15 C -0.161 4.161 16 C -0.159 4.159 17 C -0.231 4.231 18 S -0.038 6.038 19 C -0.218 4.218 20 N -0.196 5.196 21 H 0.093 0.907 22 H 0.159 0.841 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.538 5.951 0.771 17.593 hybrid contribution -1.246 -2.955 -1.179 3.417 sum 15.292 2.996 -0.408 15.588 Atomic orbital electron populations 1.70714 1.07829 1.32517 1.33304 1.27517 0.95576 1.05371 0.89243 0.82400 0.71711 0.70677 0.79249 1.24871 1.20099 1.21579 1.20057 0.88912 0.96210 1.45994 0.90109 1.18106 0.94969 0.84419 0.93646 1.24988 0.93013 1.02814 1.38228 1.82562 1.11038 1.05385 1.74559 1.27207 0.93484 0.95641 1.03860 1.19952 0.92865 0.96420 0.94115 0.87604 1.21631 0.97977 0.98181 0.98338 1.21731 0.97098 0.98941 0.98117 1.23475 0.99762 1.05646 0.94187 1.86850 1.48966 1.46278 1.21716 1.23571 0.98944 0.97959 1.01361 1.66029 1.04353 1.31363 1.17873 0.90743 0.84054 0.91111 0.90197 0.90226 0.90479 0.87862 0.89798 0.87176 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.22 13.67 55.54 0.76 -22.46 16 2 C 0.04 1.18 5.51 -17.34 -0.10 1.08 16 3 Si 1.13 27.96 25.68 -169.99 -4.36 23.59 16 4 H -0.32 -7.75 7.11 56.52 0.40 -7.34 16 5 H -0.27 -6.67 6.72 56.52 0.38 -6.29 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.48 -13.60 9.67 -37.92 -0.37 -13.97 16 8 H 0.08 2.34 8.05 -52.49 -0.42 1.92 16 9 C 0.21 5.58 6.26 -86.16 -0.54 5.04 16 10 C -0.45 -11.00 10.98 30.54 0.34 -10.66 16 11 S 0.02 0.32 22.94 -107.50 -2.47 -2.15 16 12 C 0.08 1.64 6.11 -13.55 -0.08 1.56 16 13 C -0.01 -0.15 2.48 -91.93 -0.23 -0.38 16 14 H 0.11 1.78 8.05 -51.93 -0.42 1.36 16 15 C -0.12 -1.58 4.83 -27.16 -0.13 -1.71 16 16 C -0.12 -1.21 5.75 -26.90 -0.15 -1.37 16 17 C -0.08 -0.79 6.45 37.21 0.24 -0.55 16 18 S -0.27 -3.34 22.33 -107.50 -2.40 -5.74 16 19 C -0.07 -0.96 5.63 37.21 0.21 -0.75 16 20 N -0.48 -11.79 5.30 -8.35 -0.04 -11.83 16 21 H 0.28 7.68 8.73 -40.82 -0.36 7.32 16 22 H 0.14 3.37 8.06 -52.48 -0.42 2.94 16 23 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 24 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 25 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 LS Contribution 272.33 15.07 4.10 4.10 Total: -1.00 -29.44 272.33 -9.03 -38.47 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.81 Total: -2.29 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.81 Total: -21.70 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.71 Total: -34.29 kcal Atomic # 14 Polarization: 27.96 SS G_CDS: -4.36 Total: 23.59 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -4.87 Total: -7.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.44 -9.03 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260954989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.123 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds