Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86793 * 120.00367 * 2 1 4 4 H 1.48506 * 109.46998 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47603 * 119.99582 * 3 2 1 6 6 H 1.48498 * 109.47318 * 239.99475 * 3 2 1 7 7 C 1.39722 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00575 * 2.94712 * 7 2 1 9 9 C 1.41158 * 119.99774 * 182.94235 * 7 2 1 10 10 C 1.37706 * 122.86341 * 186.62488 * 9 7 2 11 11 S 1.70986 * 108.84026 * 179.97438 * 10 9 7 12 12 C 1.75893 * 90.81100 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.99242 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.38855 * 180.17092 * 13 12 11 15 15 C 1.52584 * 109.38856 * 60.47497 * 13 12 11 16 16 C 1.52579 * 110.72794 * 169.17675 * 15 13 12 17 17 C 1.53096 * 109.95578 * 70.66842 * 16 15 13 18 18 S 1.81745 * 108.84517 * 296.97664 * 17 16 15 19 19 C 1.53095 * 109.39165 * 299.97862 * 13 12 11 20 20 N 1.28796 * 110.01702 * 359.76825 * 12 11 10 21 21 H 0.97002 * 120.00100 * 174.81524 * 1 2 3 22 22 H 1.08003 * 125.57645 * 359.95576 * 10 9 7 23 23 H 1.09005 * 109.22089 * 289.49623 * 15 13 12 24 24 H 1.08994 * 109.22701 * 48.84968 * 15 13 12 25 25 H 1.08999 * 109.38582 * 310.52379 * 16 15 13 26 26 H 1.08999 * 109.31227 * 190.77040 * 16 15 13 27 27 H 1.09001 * 109.57380 * 177.16582 * 17 16 15 28 28 H 1.09003 * 109.57639 * 56.79065 * 17 16 15 29 29 H 1.08998 * 109.57306 * 302.97957 * 19 13 12 30 30 H 1.09001 * 109.57765 * 63.36635 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 1.2793 2.7464 -0.0006 5 1 3.0980 1.6964 1.2125 6 1 3.0981 1.6962 -1.2124 7 6 2.0087 -1.2101 0.0005 8 1 1.4698 -2.1448 -0.0471 9 6 3.4189 -1.2109 0.0633 10 6 4.1720 -2.3566 -0.0657 11 16 5.8269 -1.9472 0.0654 12 6 5.4156 -0.2514 0.2867 13 6 6.4127 0.8606 0.4874 14 1 5.8824 1.8061 0.6006 15 6 7.3332 0.9409 -0.7269 16 6 8.1757 2.2122 -0.6828 17 6 9.2215 2.1076 0.4304 18 16 8.3663 1.9791 2.0290 19 6 7.2349 0.5846 1.7490 20 7 4.1374 -0.0989 0.2466 21 1 -0.4850 -0.8366 -0.0759 22 1 3.7811 -3.3510 -0.2236 23 1 7.9929 0.0731 -0.7351 24 1 6.7303 0.9411 -1.6349 25 1 7.5288 3.0685 -0.4923 26 1 8.6788 2.3446 -1.6407 27 1 9.8519 2.9968 0.4239 28 1 9.8357 1.2211 0.2725 29 1 6.5673 0.4786 2.6040 30 1 7.8103 -0.3317 1.6167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260954989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = -12.269444 kcal Electronic energy + Delta-G solvation = -14666.458941 eV Core-core repulsion = 12291.288912 eV Total energy + Delta-G solvation = -2375.170029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.45617 -38.07959 -35.46639 -33.31643 -30.83559 -28.25000 -27.92157 -25.48846 -22.89228 -21.69216 -21.17058 -20.15864 -18.10495 -17.59250 -16.56976 -16.10196 -15.67094 -15.41664 -15.17781 -14.98443 -14.44004 -14.32861 -13.83522 -13.81504 -13.73327 -12.76520 -12.66358 -12.47418 -12.42593 -12.08124 -11.80299 -11.74902 -11.58828 -11.30276 -10.70864 -10.19573 -9.94799 -9.60373 -9.36268 -8.67716 -6.69697 0.06086 0.71120 0.79649 1.40261 1.40851 1.51071 1.56367 1.96168 2.09360 2.35274 3.13175 3.19839 3.60100 3.76208 3.89173 4.08070 4.17087 4.42282 4.56400 4.61486 4.68545 4.83665 4.87196 4.95434 5.05098 5.11088 5.14023 5.30968 5.37806 5.91186 6.05355 6.62211 7.08852 7.96392 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.007701 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.701600 B = 3635.237303 C = 4206.902572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.012 3.988 3 Si 1.165 2.835 4 H -0.315 1.315 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.191 3.809 10 C -0.468 4.468 11 S 0.112 5.888 12 C 0.086 3.914 13 C -0.012 4.012 14 H 0.095 0.905 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.073 4.073 18 S -0.286 6.286 19 C -0.066 4.066 20 N -0.517 5.517 21 H 0.276 0.724 22 H 0.140 0.860 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.047 4.625 -0.659 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.202 4.202 3 Si 0.993 3.007 4 H -0.246 1.246 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.069 3.931 10 C -0.606 4.606 11 S 0.362 5.638 12 C -0.195 4.195 13 C -0.036 4.036 14 H 0.113 0.887 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.220 4.220 18 S -0.058 6.058 19 C -0.215 4.215 20 N -0.237 5.237 21 H 0.087 0.913 22 H 0.157 0.843 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.549 6.698 0.369 21.616 hybrid contribution -2.209 -3.332 -1.063 4.136 sum 18.340 3.366 -0.694 18.659 Atomic orbital electron populations 1.70751 1.08226 1.32169 1.36073 1.28408 0.95785 1.07385 0.88608 0.81915 0.70911 0.68377 0.79450 1.24648 1.19740 1.21131 1.20033 0.90413 0.95491 1.49095 0.92687 1.18191 0.94801 0.86031 0.94059 1.25431 0.96831 1.02484 1.35887 1.82107 1.05940 1.03395 1.72347 1.28146 0.93184 0.97716 1.00454 1.20212 0.92568 0.94118 0.96704 0.88655 1.21666 0.97738 1.00539 0.96011 1.21706 0.96849 0.96964 0.99805 1.23615 0.99418 1.07560 0.91433 1.87007 1.48669 1.45542 1.24594 1.23435 0.99007 0.99389 0.99663 1.65985 1.06004 1.30811 1.20876 0.91345 0.84253 0.89651 0.91230 0.90843 0.87593 0.85627 0.88117 0.88575 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.01 13.67 21.79 0.30 -49.71 16 2 C 0.01 0.69 5.51 85.17 0.47 1.16 16 3 Si 1.16 57.82 25.68 68.60 1.76 59.58 16 4 H -0.32 -15.21 7.11 99.48 0.71 -14.50 16 5 H -0.27 -13.08 6.72 99.48 0.67 -12.41 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.52 -30.66 9.67 23.35 0.23 -30.43 16 8 H 0.05 3.41 8.05 -2.91 -0.02 3.38 16 9 C 0.19 10.32 6.26 39.46 0.25 10.56 16 10 C -0.47 -22.48 10.98 67.69 0.74 -21.73 16 11 S 0.11 4.06 22.94 -56.49 -1.30 2.76 16 12 C 0.09 3.35 6.11 88.55 0.54 3.89 16 13 C -0.01 -0.34 2.48 -11.65 -0.03 -0.37 16 14 H 0.10 3.02 8.05 -2.39 -0.02 3.00 16 15 C -0.12 -2.64 4.83 30.32 0.15 -2.49 16 16 C -0.11 -1.79 5.75 30.49 0.18 -1.62 16 17 C -0.07 -1.04 6.45 72.01 0.46 -0.57 16 18 S -0.29 -6.28 22.33 -56.49 -1.26 -7.54 16 19 C -0.07 -1.65 5.63 72.01 0.41 -1.24 16 20 N -0.52 -25.24 5.30 -180.34 -0.96 -26.20 16 21 H 0.28 15.94 8.73 -92.71 -0.81 15.14 16 22 H 0.14 6.63 8.06 -2.91 -0.02 6.61 16 23 H 0.08 1.62 8.08 -2.38 -0.02 1.60 16 24 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 25 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 26 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.13 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 Total: -1.00 -65.62 272.33 2.99 -62.64 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.05 Total: 1.33 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 3.39 Total: -42.85 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -0.66 Total: -75.91 kcal Atomic # 14 Polarization: 57.82 SS G_CDS: 1.76 Total: 59.58 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.56 Total: -4.78 kcal Total: -65.62 2.99 -62.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260954989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.366 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds