Wall clock time and date at job start Mon Mar 30 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48502 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46908 * 299.99429 * 3 2 1 6 6 H 1.48490 * 109.47422 * 59.99225 * 3 2 1 7 7 C 1.37879 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46871 * 179.97438 * 9 7 2 11 11 C 1.33641 * 126.03482 * 90.04400 * 10 9 7 12 12 N 1.31782 * 114.49734 * 179.71737 * 11 10 9 13 13 C 1.29032 * 117.12615 * 0.47026 * 12 11 10 14 14 C 1.50693 * 124.91606 * 179.81145 * 13 12 11 15 15 H 1.09008 * 108.82971 * 178.22694 * 14 13 12 16 16 C 1.52333 * 108.86833 * 59.70085 * 14 13 12 17 17 C 1.54260 * 112.47388 * 239.39221 * 16 14 13 18 18 S 1.83763 * 102.67096 * 335.32779 * 17 16 14 19 19 C 1.54259 * 108.75745 * 296.69143 * 14 13 12 20 20 S 1.70975 * 110.16407 * 359.55106 * 13 12 11 21 21 H 0.97000 * 120.00110 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47359 * 60.00126 * 9 7 2 23 23 H 1.08996 * 109.47376 * 299.99381 * 9 7 2 24 24 H 1.07997 * 122.75071 * 359.96433 * 11 10 9 25 25 H 1.09002 * 108.86808 * 0.14161 * 16 14 13 26 26 H 1.09004 * 108.87242 * 118.64722 * 16 14 13 27 27 H 1.09007 * 110.78707 * 93.67041 * 17 16 14 28 28 H 1.09001 * 110.79108 * 217.12161 * 17 16 14 29 29 H 1.08996 * 110.78994 * 263.54312 * 19 14 13 30 30 H 1.09002 * 110.78619 * 26.81145 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.7405 -4.2427 1.0812 12 7 3.5752 -5.2278 0.8177 13 6 3.8047 -5.4879 -0.4252 14 6 4.7280 -6.5694 -0.9239 15 1 4.7018 -6.5795 -2.0136 16 6 4.2352 -7.9149 -0.4069 17 6 5.2894 -8.6363 0.4579 18 16 6.8683 -7.9174 -0.1481 19 6 6.1642 -6.2472 -0.4624 20 16 2.9039 -4.4326 -1.4242 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5568 0.8903 24 1 2.4864 -3.9458 2.0880 25 1 3.3379 -7.7556 0.1910 26 1 3.9834 -8.5486 -1.2573 27 1 5.1422 -8.4122 1.5144 28 1 5.2636 -9.7118 0.2823 29 1 6.7180 -5.7359 -1.2497 30 1 6.1528 -5.6511 0.4502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260967744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:07 Heat of formation + Delta-G solvation = 24.987829 kcal Electronic energy + Delta-G solvation = -14042.898256 eV Core-core repulsion = 11669.343824 eV Total energy + Delta-G solvation = -2373.554433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36724 -36.35145 -33.56913 -31.17003 -29.89192 -27.12471 -25.59218 -23.98673 -22.50395 -20.88589 -18.19975 -17.75317 -16.56308 -16.49264 -15.64795 -14.84339 -14.48903 -14.29026 -13.70280 -13.57298 -12.93154 -12.60133 -12.28477 -12.00935 -11.95467 -11.78465 -11.63026 -11.03429 -10.90130 -10.82561 -10.40970 -10.15307 -10.01275 -9.67722 -9.08307 -8.61428 -8.56055 -8.05123 -7.81845 -6.19611 -4.25278 1.32419 1.76833 1.92299 2.20800 2.38640 3.21568 3.29435 3.33615 3.42504 4.24215 4.32796 4.48847 4.77786 4.82130 4.99598 5.10981 5.16050 5.32784 5.57375 5.64999 5.78736 5.89177 5.96194 6.12729 6.22668 6.82971 7.26441 7.33924 7.74551 8.07653 8.26259 8.78509 9.40022 10.89975 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.043979 B = 0.004656 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.511444 B = 6012.175334 C = 6259.939101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.081 3.919 10 C -0.128 4.128 11 C -0.012 4.012 12 N -0.457 5.457 13 C -0.004 4.004 14 C 0.000 4.000 15 H 0.096 0.904 16 C -0.113 4.113 17 C -0.059 4.059 18 S -0.307 6.307 19 C -0.049 4.049 20 S 0.097 5.903 21 H 0.264 0.736 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.171 0.829 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 -13.920 -2.157 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.041 3.959 10 C -0.249 4.249 11 C -0.160 4.160 12 N -0.171 5.171 13 C -0.282 4.282 14 C -0.024 4.024 15 H 0.115 0.885 16 C -0.153 4.153 17 C -0.207 4.207 18 S -0.080 6.080 19 C -0.198 4.198 20 S 0.351 5.649 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.188 0.812 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.705 -14.486 -2.955 17.157 hybrid contribution -0.951 1.821 1.083 2.322 sum 7.755 -12.665 -1.872 14.968 Atomic orbital electron populations 1.69949 1.06063 1.27119 1.49815 1.24995 0.94926 0.99387 0.94740 0.86418 0.80114 0.83076 0.77802 1.19590 1.20749 1.20741 1.21049 0.93134 0.89407 1.52074 0.92247 1.17966 0.91295 0.87480 0.99117 1.26901 1.03476 1.01921 0.92621 1.21529 0.98832 0.95286 1.00371 1.66024 1.15743 1.16788 1.18595 1.26418 1.05688 1.03699 0.92434 1.20256 0.90604 0.90805 1.00744 0.88533 1.22005 0.99415 0.93869 1.00022 1.24089 0.91653 1.02276 1.02660 1.87849 1.20839 1.13420 1.85886 1.24253 0.94968 0.95162 1.05459 1.83873 1.39740 1.27929 1.13381 0.92601 0.94703 0.93608 0.81221 0.89730 0.90308 0.88943 0.87881 0.87590 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.08 1.98 5.51 -29.03 -0.16 1.82 16 10 C -0.13 -2.67 5.79 -35.92 -0.21 -2.88 16 11 C -0.01 -0.24 11.25 -19.18 -0.22 -0.45 16 12 N -0.46 -8.15 10.21 -11.87 -0.12 -8.28 16 13 C 0.00 -0.06 5.42 -13.46 -0.07 -0.14 16 14 C 0.00 0.00 3.09 -91.46 -0.28 -0.28 16 15 H 0.10 1.04 8.11 -51.92 -0.42 0.62 16 16 C -0.11 -1.21 5.97 -26.41 -0.16 -1.37 16 17 C -0.06 -0.60 7.44 37.82 0.28 -0.31 16 18 S -0.31 -3.70 23.26 -107.50 -2.50 -6.20 16 19 C -0.05 -0.60 6.91 37.82 0.26 -0.34 16 20 S 0.10 1.68 23.16 -107.50 -2.49 -0.81 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 25 H 0.08 1.02 7.41 -51.93 -0.38 0.64 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.40 7.70 -51.93 -0.40 1.00 16 LS Contribution 282.87 15.07 4.26 4.26 Total: -1.00 -28.44 282.87 -9.80 -38.24 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.71 Total: -1.91 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.96 Total: -16.62 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.62 Total: -32.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -4.99 Total: -7.01 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.44 -9.80 -38.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.228 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds