Wall clock time and date at job start Mon Mar 30 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48502 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46908 * 299.99429 * 3 2 1 6 6 H 1.48490 * 109.47422 * 59.99225 * 3 2 1 7 7 C 1.37879 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46871 * 179.97438 * 9 7 2 11 11 C 1.33641 * 126.03482 * 90.04400 * 10 9 7 12 12 N 1.31782 * 114.49734 * 179.71737 * 11 10 9 13 13 C 1.29032 * 117.12615 * 0.47026 * 12 11 10 14 14 C 1.50693 * 124.91606 * 179.81145 * 13 12 11 15 15 H 1.09008 * 108.82971 * 178.22694 * 14 13 12 16 16 C 1.52333 * 108.86833 * 59.70085 * 14 13 12 17 17 C 1.54260 * 112.47388 * 239.39221 * 16 14 13 18 18 S 1.83763 * 102.67096 * 335.32779 * 17 16 14 19 19 C 1.54259 * 108.75745 * 296.69143 * 14 13 12 20 20 S 1.70975 * 110.16407 * 359.55106 * 13 12 11 21 21 H 0.97000 * 120.00110 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47359 * 60.00126 * 9 7 2 23 23 H 1.08996 * 109.47376 * 299.99381 * 9 7 2 24 24 H 1.07997 * 122.75071 * 359.96433 * 11 10 9 25 25 H 1.09002 * 108.86808 * 0.14161 * 16 14 13 26 26 H 1.09004 * 108.87242 * 118.64722 * 16 14 13 27 27 H 1.09007 * 110.78707 * 93.67041 * 17 16 14 28 28 H 1.09001 * 110.79108 * 217.12161 * 17 16 14 29 29 H 1.08996 * 110.78994 * 263.54312 * 19 14 13 30 30 H 1.09002 * 110.78619 * 26.81145 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.7405 -4.2427 1.0812 12 7 3.5752 -5.2278 0.8177 13 6 3.8047 -5.4879 -0.4252 14 6 4.7280 -6.5694 -0.9239 15 1 4.7018 -6.5795 -2.0136 16 6 4.2352 -7.9149 -0.4069 17 6 5.2894 -8.6363 0.4579 18 16 6.8683 -7.9174 -0.1481 19 6 6.1642 -6.2472 -0.4624 20 16 2.9039 -4.4326 -1.4242 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5568 0.8903 24 1 2.4864 -3.9458 2.0880 25 1 3.3379 -7.7556 0.1910 26 1 3.9834 -8.5486 -1.2573 27 1 5.1422 -8.4122 1.5144 28 1 5.2636 -9.7118 0.2823 29 1 6.7180 -5.7359 -1.2497 30 1 6.1528 -5.6511 0.4502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260967744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:06 Heat of formation + Delta-G solvation = 9.696680 kcal Electronic energy + Delta-G solvation = -14043.561330 eV Core-core repulsion = 11669.343824 eV Total energy + Delta-G solvation = -2374.217507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77295 -37.44362 -35.50965 -32.84756 -30.98588 -28.65993 -26.98129 -25.35668 -24.17882 -22.06941 -19.53813 -19.10261 -18.57874 -17.54838 -16.77173 -16.63386 -15.68188 -15.61972 -15.03445 -14.73817 -14.40232 -14.06516 -13.91701 -13.69476 -12.95601 -12.86757 -12.81947 -12.76101 -12.52328 -12.10300 -11.92877 -11.79786 -11.65961 -11.04634 -10.68682 -10.45732 -10.05912 -9.59471 -8.75915 -8.26930 -6.40657 -0.12187 0.45885 0.89267 0.91650 1.29511 1.38000 1.39586 1.51887 1.93715 2.37605 3.05487 3.07593 3.53135 3.77354 3.91980 4.08302 4.21248 4.36031 4.43535 4.57412 4.59753 4.71349 4.82282 5.03600 5.06399 5.20167 5.33176 5.39211 5.64735 6.03928 6.68901 6.81872 7.28794 8.82625 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.043979 B = 0.004656 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.511444 B = 6012.175334 C = 6259.939101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.093 3.907 10 C -0.178 4.178 11 C -0.002 4.002 12 N -0.473 5.473 13 C 0.026 3.974 14 C -0.003 4.003 15 H 0.121 0.879 16 C -0.111 4.111 17 C -0.051 4.051 18 S -0.322 6.322 19 C -0.047 4.047 20 S 0.125 5.875 21 H 0.268 0.732 22 H 0.013 0.987 23 H 0.023 0.977 24 H 0.171 0.829 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 -15.071 -2.955 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.054 3.946 10 C -0.299 4.299 11 C -0.150 4.150 12 N -0.187 5.187 13 C -0.253 4.253 14 C -0.026 4.026 15 H 0.139 0.861 16 C -0.151 4.151 17 C -0.199 4.199 18 S -0.096 6.096 19 C -0.197 4.197 20 S 0.381 5.619 21 H 0.077 0.923 22 H 0.031 0.969 23 H 0.041 0.959 24 H 0.188 0.812 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.254 -15.636 -3.755 19.072 hybrid contribution -1.373 2.032 1.323 2.787 sum 8.881 -13.604 -2.432 16.427 Atomic orbital electron populations 1.70053 1.07532 1.28178 1.50683 1.25842 0.95735 1.02896 0.94256 0.85405 0.78844 0.78795 0.78096 1.19154 1.19968 1.20106 1.21334 0.93022 0.90884 1.51862 0.92822 1.17558 0.91517 0.88586 0.96961 1.26471 1.05294 1.02958 0.95171 1.21612 0.98176 0.95011 1.00247 1.66120 1.16260 1.16843 1.19485 1.27197 1.03810 1.02682 0.91628 1.20588 0.89626 0.90245 1.02188 0.86110 1.22011 0.98829 0.93313 1.00977 1.24165 0.89950 1.03590 1.02148 1.87959 1.22412 1.13180 1.86008 1.24189 0.95066 0.95378 1.05049 1.83665 1.39273 1.27385 1.11608 0.92300 0.96901 0.95913 0.81215 0.90990 0.87602 0.89511 0.85340 0.86145 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.68 13.29 21.45 0.28 -53.39 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -29.35 9.09 25.60 0.23 -29.12 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.09 4.76 5.51 29.10 0.16 4.92 16 10 C -0.18 -7.55 5.79 24.64 0.14 -7.41 16 11 C 0.00 -0.08 11.25 83.66 0.94 0.86 16 12 N -0.47 -16.43 10.21 -191.45 -1.95 -18.38 16 13 C 0.03 0.78 5.42 88.52 0.48 1.26 16 14 C 0.00 -0.05 3.09 -11.34 -0.03 -0.09 16 15 H 0.12 2.10 8.11 -2.38 -0.02 2.08 16 16 C -0.11 -2.02 5.97 30.80 0.18 -1.83 16 17 C -0.05 -0.88 7.44 72.41 0.54 -0.34 16 18 S -0.32 -6.95 23.26 -56.49 -1.31 -8.27 16 19 C -0.05 -1.05 6.91 72.41 0.50 -0.55 16 20 S 0.13 4.22 23.16 -56.49 -1.31 2.91 16 21 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 22 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.17 6.45 8.06 -2.91 -0.02 6.43 16 25 H 0.07 1.55 7.41 -2.39 -0.02 1.53 16 26 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 2.13 7.70 -2.39 -0.02 2.11 16 Total: -1.00 -61.46 282.87 2.47 -58.98 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.13 Total: 4.22 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 3.61 Total: -31.17 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.67 Total: -71.77 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.62 Total: -5.35 kcal Total: -61.46 2.47 -58.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.679 kcal (2) G-P(sol) polarization free energy of solvation -61.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds