Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38190 * 119.96298 * 2 1 4 4 C 1.38673 * 119.95793 * 180.29302 * 3 2 1 5 5 O 1.35923 * 120.05807 * 179.72733 * 4 3 2 6 6 C 1.38848 * 119.87848 * 359.70798 * 4 3 2 7 7 Cl 1.73601 * 120.03945 * 179.97438 * 6 4 3 8 8 C 1.38217 * 119.92401 * 359.97438 * 6 4 3 9 9 C 1.38235 * 119.96158 * 179.73109 * 2 1 3 10 10 C 1.50698 * 119.93862 * 359.97438 * 9 2 1 11 11 H 1.09008 * 109.46977 * 39.73636 * 10 9 2 12 12 N 1.46904 * 109.46837 * 159.72894 * 10 9 2 13 13 C 1.52997 * 109.47721 * 279.73487 * 10 9 2 14 14 C 1.50701 * 109.47212 * 174.99887 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.08995 * 109.47541 * 270.27373 * 1 2 3 23 23 H 1.09000 * 109.47253 * 30.27848 * 1 2 3 24 24 H 1.09003 * 109.47402 * 150.26876 * 1 2 3 25 25 H 1.07998 * 120.02455 * 0.02562 * 3 2 1 26 26 H 0.96698 * 114.00273 * 269.97463 * 5 4 3 27 27 H 1.08000 * 119.97709 * 179.97438 * 8 6 4 28 28 H 1.00898 * 111.00551 * 296.05373 * 12 10 9 29 29 H 1.00898 * 110.99372 * 60.01160 * 12 10 9 30 30 H 1.09002 * 109.47153 * 54.99889 * 13 10 9 31 31 H 1.09001 * 109.46832 * 295.00079 * 13 10 9 32 32 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5839 1.1971 -0.0061 5 8 4.2648 2.3735 -0.0118 6 6 4.2755 -0.0069 -0.0061 7 17 6.0115 -0.0119 -0.0145 8 6 3.5802 -1.2014 0.0005 9 6 2.1974 -1.1976 0.0056 10 6 1.4416 -2.5014 0.0123 11 1 0.5754 -2.4226 -0.6447 12 7 2.3199 -3.5789 -0.4626 13 6 0.9753 -2.8134 1.4357 14 6 0.1162 -4.0515 1.4228 15 1 -0.0774 -4.5647 0.4925 16 6 -0.4217 -4.5296 2.5989 17 7 -0.1854 -3.9049 3.7318 18 14 -1.4859 -6.0647 2.5830 19 1 -0.6300 -7.2624 2.7777 20 1 -2.4844 -5.9862 3.6795 21 1 -2.1895 -6.1658 1.2793 22 1 -0.3634 0.0049 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5097 25 1 1.6570 2.1324 0.0004 26 1 4.4583 2.7118 -0.8967 27 1 4.1173 -2.1384 0.0001 28 1 2.5897 -3.4287 -1.4232 29 1 3.1309 -3.6721 0.1305 30 1 0.3967 -1.9737 1.8208 31 1 1.8431 -2.9798 2.0740 32 1 -0.5641 -4.2411 4.5591 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261029720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = -36.441168 kcal Electronic energy + Delta-G solvation = -16584.542626 eV Core-core repulsion = 13763.527854 eV Total energy + Delta-G solvation = -2821.014771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.03185 -37.56598 -36.43636 -34.76088 -32.57705 -32.19830 -29.26074 -28.25543 -26.65625 -24.47330 -22.38401 -21.41371 -19.87930 -18.08640 -16.69337 -16.26010 -15.82273 -15.14588 -15.03502 -14.34827 -14.12822 -13.49672 -13.44876 -13.03683 -12.64924 -12.49875 -12.05131 -11.95023 -11.54397 -11.18056 -11.09585 -10.97632 -10.70453 -10.54509 -10.46389 -10.24491 -9.61625 -9.11069 -8.65495 -8.32161 -8.12030 -8.04448 -5.93811 -3.93137 1.19903 1.30474 2.19800 3.37262 3.43349 3.46764 3.59370 4.10369 4.52158 4.83540 5.03297 5.20057 5.27600 5.40293 5.45647 5.63663 5.68207 5.87967 5.98480 6.15636 6.21544 6.31592 6.33222 6.61589 6.80174 6.88592 7.48557 7.55357 7.66553 7.91815 8.05292 8.09863 8.48407 9.12992 9.69191 11.17788 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.005397 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.462653 B = 5187.039468 C = 5582.254333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.133 4.133 4 C 0.099 3.901 5 O -0.489 6.489 6 C -0.062 4.062 7 Cl -0.071 7.071 8 C -0.103 4.103 9 C -0.093 4.093 10 C 0.132 3.868 11 H 0.087 0.913 12 N -0.823 5.823 13 C 0.037 3.963 14 C -0.495 4.495 15 H 0.063 0.937 16 C 0.052 3.948 17 N -0.901 5.901 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.275 1.275 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.385 0.615 27 H 0.133 0.867 28 H 0.323 0.677 29 H 0.335 0.665 30 H 0.024 0.976 31 H 0.016 0.984 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 10.394 -10.252 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.057 4.057 3 C -0.152 4.152 4 C 0.053 3.947 5 O -0.298 6.298 6 C -0.089 4.089 7 Cl -0.042 7.042 8 C -0.122 4.122 9 C -0.096 4.096 10 C 0.020 3.980 11 H 0.105 0.895 12 N -0.351 5.351 13 C 0.000 4.000 14 C -0.534 4.534 15 H 0.081 0.919 16 C -0.148 4.148 17 N -0.542 5.542 18 Si 0.721 3.279 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.200 1.200 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.151 0.849 26 H 0.240 0.760 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.149 0.851 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.363 9.818 -9.308 14.951 hybrid contribution 0.530 0.070 -0.380 0.656 sum 6.894 9.888 -9.688 15.465 Atomic orbital electron populations 1.20911 0.90149 1.02813 1.03633 1.19789 0.96916 0.91635 0.97348 1.21216 0.92265 0.98737 1.02964 1.18051 0.89684 0.83988 1.02948 1.84869 1.76192 1.35672 1.33049 1.21275 0.84453 0.94665 1.08551 1.98342 1.09933 1.98926 1.97033 1.20807 0.93903 0.96507 1.00983 1.21341 0.93167 0.98355 0.96736 1.20911 0.93427 0.82002 1.01645 0.89537 1.58802 1.23302 1.47649 1.05327 1.19142 0.96416 0.97204 0.87220 1.21134 1.28749 1.09842 0.93662 0.91920 1.25016 0.96926 0.97193 0.95703 1.69970 1.45743 1.40161 0.98289 0.86581 0.80194 0.83675 0.77415 1.20859 1.21576 1.19955 0.89879 0.92037 0.90179 0.84875 0.75961 0.84941 0.86556 0.85061 0.95755 0.96605 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 8.93 36.01 0.32 -1.36 16 2 C -0.06 -0.86 5.87 -104.64 -0.61 -1.48 16 3 C -0.13 -1.85 9.64 -39.44 -0.38 -2.24 16 4 C 0.10 1.40 6.70 -39.19 -0.26 1.14 16 5 O -0.49 -5.99 12.97 -19.50 -0.25 -6.24 16 6 C -0.06 -0.93 6.33 -39.36 -0.25 -1.18 16 7 Cl -0.07 -0.96 28.51 -51.86 -1.48 -2.44 16 8 C -0.10 -1.61 9.03 -39.57 -0.36 -1.97 16 9 C -0.09 -1.56 5.08 -104.61 -0.53 -2.09 16 10 C 0.13 2.50 2.37 -68.86 -0.16 2.34 16 11 H 0.09 1.64 6.39 -51.92 -0.33 1.31 16 12 N -0.82 -14.47 8.42 -5.65 -0.05 -14.51 16 13 C 0.04 0.91 4.55 -27.88 -0.13 0.79 16 14 C -0.50 -13.51 8.84 -34.44 -0.30 -13.82 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 16 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 17 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H 0.08 1.28 7.78 -51.93 -0.40 0.88 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.08 1.18 6.11 -51.93 -0.32 0.86 16 25 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.39 2.85 9.06 45.56 0.41 3.26 16 27 H 0.13 1.94 6.24 -52.49 -0.33 1.62 16 28 H 0.32 4.71 9.06 -39.29 -0.36 4.36 16 29 H 0.34 5.73 7.28 -39.29 -0.29 5.45 16 30 H 0.02 0.63 7.11 -51.93 -0.37 0.26 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 286.20 15.07 4.31 4.31 Total: -1.00 -30.99 286.20 -7.30 -38.29 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -2.79 Total: 8.49 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.76 Total: -18.51 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.69 Total: -40.60 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.25 Total: -6.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.99 -7.30 -38.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.853 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds