Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38190 * 119.96298 * 2 1 4 4 C 1.38673 * 119.95793 * 180.29302 * 3 2 1 5 5 O 1.35923 * 120.05807 * 179.72733 * 4 3 2 6 6 C 1.38848 * 119.87848 * 359.70798 * 4 3 2 7 7 Cl 1.73601 * 120.03945 * 179.97438 * 6 4 3 8 8 C 1.38217 * 119.92401 * 359.97438 * 6 4 3 9 9 C 1.38235 * 119.96158 * 179.73109 * 2 1 3 10 10 C 1.50698 * 119.93862 * 359.97438 * 9 2 1 11 11 H 1.09008 * 109.46977 * 39.73636 * 10 9 2 12 12 N 1.46904 * 109.46837 * 159.72894 * 10 9 2 13 13 C 1.52997 * 109.47721 * 279.73487 * 10 9 2 14 14 C 1.50701 * 109.47212 * 174.99887 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.08995 * 109.47541 * 270.27373 * 1 2 3 23 23 H 1.09000 * 109.47253 * 30.27848 * 1 2 3 24 24 H 1.09003 * 109.47402 * 150.26876 * 1 2 3 25 25 H 1.07998 * 120.02455 * 0.02562 * 3 2 1 26 26 H 0.96698 * 114.00273 * 269.97463 * 5 4 3 27 27 H 1.08000 * 119.97709 * 179.97438 * 8 6 4 28 28 H 1.00898 * 111.00551 * 296.05373 * 12 10 9 29 29 H 1.00898 * 110.99372 * 60.01160 * 12 10 9 30 30 H 1.09002 * 109.47153 * 54.99889 * 13 10 9 31 31 H 1.09001 * 109.46832 * 295.00079 * 13 10 9 32 32 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5839 1.1971 -0.0061 5 8 4.2648 2.3735 -0.0118 6 6 4.2755 -0.0069 -0.0061 7 17 6.0115 -0.0119 -0.0145 8 6 3.5802 -1.2014 0.0005 9 6 2.1974 -1.1976 0.0056 10 6 1.4416 -2.5014 0.0123 11 1 0.5754 -2.4226 -0.6447 12 7 2.3199 -3.5789 -0.4626 13 6 0.9753 -2.8134 1.4357 14 6 0.1162 -4.0515 1.4228 15 1 -0.0774 -4.5647 0.4925 16 6 -0.4217 -4.5296 2.5989 17 7 -0.1854 -3.9049 3.7318 18 14 -1.4859 -6.0647 2.5830 19 1 -0.6300 -7.2624 2.7777 20 1 -2.4844 -5.9862 3.6795 21 1 -2.1895 -6.1658 1.2793 22 1 -0.3634 0.0049 1.0276 23 1 -0.3634 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5097 25 1 1.6570 2.1324 0.0004 26 1 4.4583 2.7118 -0.8967 27 1 4.1173 -2.1384 0.0001 28 1 2.5897 -3.4287 -1.4232 29 1 3.1309 -3.6721 0.1305 30 1 0.3967 -1.9737 1.8208 31 1 1.8431 -2.9798 2.0740 32 1 -0.5641 -4.2411 4.5591 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261029720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = -58.406526 kcal Electronic energy + Delta-G solvation = -16585.495115 eV Core-core repulsion = 13763.527854 eV Total energy + Delta-G solvation = -2821.967261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19876 -38.73034 -37.52581 -36.22679 -34.46459 -33.47584 -30.47318 -30.13069 -27.82537 -26.18753 -23.91718 -22.62960 -21.33799 -19.13130 -18.54788 -17.56088 -17.16485 -16.72818 -16.22133 -16.18170 -15.40039 -14.66400 -14.64736 -14.49627 -14.21004 -13.75586 -13.50181 -13.32681 -13.13265 -12.76409 -12.54163 -12.41832 -12.26213 -12.11768 -11.92244 -11.55324 -11.36570 -11.16698 -10.49236 -9.82971 -9.48334 -9.32170 -8.09881 -6.15819 0.03736 0.15374 1.07693 1.44441 1.45489 1.56117 2.42344 2.50024 3.08396 3.23895 3.71395 3.80830 3.87369 4.07430 4.25780 4.45685 4.55508 4.65982 4.80477 4.86596 4.94428 5.05776 5.14601 5.19936 5.51670 5.53371 5.69548 5.73020 5.89141 6.30628 6.49165 6.72804 6.79000 6.98768 7.50917 9.01821 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.005397 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.462653 B = 5187.039468 C = 5582.254333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.132 4.132 4 C 0.109 3.891 5 O -0.492 6.492 6 C -0.075 4.075 7 Cl -0.061 7.061 8 C -0.105 4.105 9 C -0.115 4.115 10 C 0.148 3.852 11 H 0.086 0.914 12 N -0.831 5.831 13 C 0.046 3.954 14 C -0.503 4.503 15 H 0.062 0.938 16 C -0.004 4.004 17 N -0.939 5.939 18 Si 0.959 3.041 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.263 1.263 22 H 0.064 0.936 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.160 0.840 26 H 0.409 0.591 27 H 0.136 0.864 28 H 0.343 0.657 29 H 0.337 0.663 30 H 0.004 0.996 31 H -0.018 1.018 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 11.129 -11.535 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.064 4.064 3 C -0.150 4.150 4 C 0.063 3.937 5 O -0.305 6.305 6 C -0.102 4.102 7 Cl -0.032 7.032 8 C -0.124 4.124 9 C -0.118 4.118 10 C 0.036 3.964 11 H 0.104 0.896 12 N -0.361 5.361 13 C 0.009 3.991 14 C -0.541 4.541 15 H 0.080 0.920 16 C -0.201 4.201 17 N -0.581 5.581 18 Si 0.784 3.216 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.187 1.187 22 H 0.083 0.917 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.178 0.822 26 H 0.269 0.731 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.022 0.978 31 H 0.000 1.000 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.512 10.564 -10.638 16.345 hybrid contribution 0.581 -0.058 -0.006 0.584 sum 7.092 10.506 -10.644 16.553 Atomic orbital electron populations 1.20896 0.89627 1.04004 1.02754 1.19975 0.97489 0.91828 0.97083 1.21447 0.92335 0.99133 1.02084 1.18141 0.89890 0.84353 1.01281 1.84809 1.75845 1.34669 1.35203 1.21382 0.85177 0.94760 1.08907 1.98342 1.08907 1.98914 1.97003 1.20846 0.93577 0.97208 1.00804 1.21087 0.93627 0.97684 0.99386 1.20412 0.94159 0.83766 0.98055 0.89593 1.58697 1.23385 1.47400 1.06640 1.18930 0.94391 0.95547 0.90238 1.21494 1.28588 1.10540 0.93508 0.91966 1.25867 0.98421 1.00343 0.95430 1.70104 1.47162 1.41956 0.98907 0.85541 0.78459 0.79746 0.77805 1.20570 1.21315 1.18748 0.91712 0.88710 0.91159 0.82235 0.73150 0.84597 0.84400 0.84885 0.97773 0.99975 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 8.93 71.24 0.64 -2.58 16 2 C -0.06 -1.88 5.87 -19.88 -0.12 -1.99 16 3 C -0.13 -3.36 9.64 22.36 0.22 -3.15 16 4 C 0.11 2.84 6.70 22.52 0.15 2.99 16 5 O -0.49 -10.58 12.97 -92.69 -1.20 -11.78 16 6 C -0.08 -2.12 6.33 22.41 0.14 -1.98 16 7 Cl -0.06 -1.54 28.51 -2.72 -0.08 -1.62 16 8 C -0.11 -3.23 9.03 22.28 0.20 -3.03 16 9 C -0.12 -3.83 5.08 -19.85 -0.10 -3.93 16 10 C 0.15 5.67 2.37 44.17 0.10 5.78 16 11 H 0.09 3.27 6.39 -2.38 -0.02 3.26 16 12 N -0.83 -29.07 8.42 -171.79 -1.45 -30.52 16 13 C 0.05 2.33 4.55 29.85 0.14 2.47 16 14 C -0.50 -27.84 8.84 25.60 0.23 -27.61 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 17 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 18 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 22 H 0.06 2.03 7.78 -2.39 -0.02 2.01 16 23 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 24 H 0.07 2.06 6.11 -2.39 -0.01 2.04 16 25 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.41 4.63 9.06 -74.06 -0.67 3.96 16 27 H 0.14 3.95 6.24 -2.91 -0.02 3.93 16 28 H 0.34 9.68 9.06 -89.70 -0.81 8.87 16 29 H 0.34 11.58 7.28 -89.70 -0.65 10.93 16 30 H 0.00 0.22 7.11 -2.39 -0.02 0.20 16 31 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -66.43 286.20 0.69 -65.74 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.95 Total: 21.07 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 2.06 Total: -32.83 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.16 Total: -87.39 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.20 Total: -11.78 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -66.43 0.69 -65.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.332 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds