Wall clock time and date at job start Mon Mar 30 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38194 * 119.96064 * 2 1 4 4 C 1.38674 * 119.95741 * 180.29674 * 3 2 1 5 5 O 1.35921 * 120.05755 * 179.97438 * 4 3 2 6 6 C 1.38852 * 119.87691 * 359.97438 * 4 3 2 7 7 Cl 1.73605 * 120.03474 * 179.97438 * 6 4 3 8 8 C 1.38216 * 119.92872 * 359.97438 * 6 4 3 9 9 C 1.38235 * 119.96322 * 180.27104 * 2 1 3 10 10 C 1.50698 * 119.93679 * 359.70290 * 9 2 1 11 11 H 1.09004 * 109.47455 * 325.00062 * 10 9 2 12 12 N 1.46906 * 109.47172 * 205.00090 * 10 9 2 13 13 C 1.52999 * 109.47130 * 84.99841 * 10 9 2 14 14 C 1.50698 * 109.47382 * 184.99816 * 13 10 9 15 15 H 1.08011 * 119.99966 * 359.97438 * 14 13 10 16 16 C 1.37881 * 120.00473 * 180.02562 * 14 13 10 17 17 N 1.31512 * 119.99330 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47032 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46953 * 119.99566 * 18 16 14 21 21 H 1.48493 * 109.46959 * 239.99692 * 18 16 14 22 22 H 1.08999 * 109.47302 * 269.72978 * 1 2 3 23 23 H 1.09006 * 109.46622 * 29.72669 * 1 2 3 24 24 H 1.09000 * 109.47101 * 149.72107 * 1 2 3 25 25 H 1.08003 * 120.02739 * 0.25012 * 3 2 1 26 26 H 0.96701 * 114.00319 * 269.97125 * 5 4 3 27 27 H 1.07998 * 119.98125 * 180.02562 * 8 6 4 28 28 H 1.00897 * 110.99851 * 299.99935 * 12 10 9 29 29 H 1.00900 * 110.99909 * 63.95602 * 12 10 9 30 30 H 1.08998 * 109.47117 * 305.00143 * 13 10 9 31 31 H 1.09005 * 109.46859 * 64.99993 * 13 10 9 32 32 H 0.97001 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1973 0.0000 4 6 3.5839 1.1972 -0.0062 5 8 4.2647 2.3736 -0.0068 6 6 4.2755 -0.0068 -0.0119 7 17 6.0115 -0.0117 -0.0204 8 6 3.5803 -1.2014 -0.0108 9 6 2.1974 -1.1976 -0.0057 10 6 1.4417 -2.5014 -0.0051 11 1 0.5338 -2.3948 0.5887 12 7 2.2847 -3.5558 0.5743 13 6 1.0707 -2.8764 -1.4412 14 6 0.2107 -4.1139 -1.4311 15 1 -0.0453 -4.5860 -0.4939 16 6 -0.2485 -4.6442 -2.6181 17 7 0.0644 -4.0702 -3.7592 18 14 -1.3140 -6.1785 -2.6055 19 1 -1.5194 -6.6270 -1.2048 20 1 -2.6287 -5.8733 -3.2248 21 1 -0.6413 -7.2545 -3.3767 22 1 -0.3634 -0.0048 1.0276 23 1 -0.3633 0.8925 -0.5096 24 1 -0.3633 -0.8875 -0.5182 25 1 1.6570 2.1325 0.0041 26 1 4.4582 2.7157 -0.8903 27 1 4.1174 -2.1384 -0.0148 28 1 3.1332 -3.6740 0.0413 29 1 2.4901 -3.3630 1.5431 30 1 0.5204 -2.0553 -1.9006 31 1 1.9787 -3.0697 -2.0124 32 1 -0.2589 -4.4430 -4.5943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261029721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:55 Heat of formation + Delta-G solvation = -59.425093 kcal Electronic energy + Delta-G solvation = -16581.522324 eV Core-core repulsion = 13759.510895 eV Total energy + Delta-G solvation = -2822.011429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19323 -38.72164 -37.52459 -36.23196 -34.45663 -33.46450 -30.49121 -30.12798 -27.82029 -26.17618 -23.94357 -22.61029 -21.31972 -19.12333 -18.55905 -17.58559 -17.15722 -16.72587 -16.21822 -16.10756 -15.37239 -14.93961 -14.56526 -14.45534 -14.10871 -13.68986 -13.50056 -13.36245 -13.14652 -12.76402 -12.57529 -12.42405 -12.24450 -12.11054 -11.93465 -11.55728 -11.39010 -11.15418 -10.49847 -9.83514 -9.48367 -9.31057 -8.10306 -6.15941 0.03547 0.15536 1.07836 1.43332 1.45181 1.57872 2.40133 2.49877 3.11126 3.23555 3.71168 3.80720 3.87514 4.08404 4.29147 4.46135 4.57010 4.62982 4.80621 4.83898 4.95026 5.05312 5.15187 5.22206 5.49690 5.55537 5.69426 5.71357 5.89283 6.30560 6.49594 6.69976 6.78068 6.98639 7.50827 9.01493 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.005422 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.036588 B = 5163.318089 C = 5545.718304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 C -0.131 4.131 4 C 0.109 3.891 5 O -0.492 6.492 6 C -0.075 4.075 7 Cl -0.061 7.061 8 C -0.104 4.104 9 C -0.115 4.115 10 C 0.148 3.852 11 H 0.083 0.917 12 N -0.831 5.831 13 C 0.047 3.953 14 C -0.503 4.503 15 H 0.061 0.939 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.958 3.042 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.285 1.285 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.160 0.840 26 H 0.409 0.591 27 H 0.135 0.865 28 H 0.337 0.663 29 H 0.342 0.658 30 H 0.003 0.997 31 H -0.015 1.015 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 11.590 8.034 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.063 4.063 3 C -0.150 4.150 4 C 0.063 3.937 5 O -0.305 6.305 6 C -0.102 4.102 7 Cl -0.032 7.032 8 C -0.123 4.123 9 C -0.118 4.118 10 C 0.036 3.964 11 H 0.101 0.899 12 N -0.361 5.361 13 C 0.010 3.990 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.784 3.216 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.211 1.211 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.178 0.822 26 H 0.268 0.732 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.021 0.979 31 H 0.003 0.997 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.869 11.004 8.310 14.986 hybrid contribution 0.606 -0.067 -0.894 1.082 sum 6.474 10.937 7.415 14.714 Atomic orbital electron populations 1.20959 0.89555 1.03831 1.03536 1.19996 0.97564 0.91740 0.97010 1.21452 0.92287 0.99158 1.02080 1.18140 0.89924 0.84367 1.01272 1.84778 1.75859 1.34618 1.35231 1.21382 0.85163 0.94774 1.08926 1.98342 1.08955 1.98916 1.97007 1.20828 0.93641 0.97130 1.00744 1.21086 0.93594 0.97656 0.99416 1.20393 0.94552 0.83996 0.97434 0.89861 1.58717 1.23342 1.47688 1.06333 1.18940 0.94664 0.95293 0.90136 1.21524 1.29312 1.10780 0.92495 0.92070 1.25854 0.98251 1.00456 0.95444 1.70102 1.47713 1.42236 0.97988 0.85501 0.78343 0.79517 0.78261 1.18842 1.20725 1.21146 0.89216 0.89594 0.92015 0.82206 0.73229 0.84766 0.84870 0.84519 0.97858 0.99663 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.30 9.21 71.24 0.66 -2.64 16 2 C -0.06 -1.84 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -3.33 9.64 22.36 0.22 -3.11 16 4 C 0.11 2.83 6.70 22.52 0.15 2.98 16 5 O -0.49 -10.59 12.96 -92.66 -1.20 -11.79 16 6 C -0.08 -2.14 6.33 22.41 0.14 -2.00 16 7 Cl -0.06 -1.57 28.51 -2.72 -0.08 -1.65 16 8 C -0.10 -3.24 9.05 22.28 0.20 -3.03 16 9 C -0.11 -3.82 5.05 -19.85 -0.10 -3.92 16 10 C 0.15 5.69 2.23 44.17 0.10 5.79 16 11 H 0.08 3.20 7.00 -2.38 -0.02 3.18 16 12 N -0.83 -29.35 8.54 -171.79 -1.47 -30.81 16 13 C 0.05 2.35 4.35 29.85 0.13 2.48 16 14 C -0.50 -27.71 8.84 25.60 0.23 -27.49 16 15 H 0.06 3.34 7.74 -2.90 -0.02 3.32 16 16 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 17 N -0.94 -56.50 13.29 21.45 0.28 -56.22 16 18 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 19 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.09 1.92 8.08 -2.38 -0.02 1.90 16 24 H 0.06 2.06 5.47 -2.39 -0.01 2.05 16 25 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 26 H 0.41 5.23 9.06 -74.06 -0.67 4.55 16 27 H 0.13 3.99 6.28 -2.91 -0.02 3.97 16 28 H 0.34 11.59 7.20 -89.70 -0.65 10.95 16 29 H 0.34 9.93 9.06 -89.69 -0.81 9.12 16 30 H 0.00 0.17 7.00 -2.39 -0.02 0.16 16 31 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -65.36 286.44 0.68 -64.68 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -0.95 Total: 21.86 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 2.07 Total: -32.65 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.18 Total: -87.03 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.20 Total: -11.79 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -65.36 0.68 -64.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261029721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.251 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds