Wall clock time and date at job start Mon Mar 30 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38296 * 119.93871 * 2 1 4 4 C 1.38208 * 120.04218 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 120.03957 * 179.97438 * 4 3 2 6 6 C 1.38859 * 119.92471 * 359.97438 * 4 3 2 7 7 O 1.35919 * 120.05987 * 179.97438 * 6 4 3 8 8 C 1.38671 * 119.87933 * 359.73067 * 6 4 3 9 9 C 1.50699 * 120.02303 * 180.26745 * 8 6 4 10 10 H 1.08994 * 109.47028 * 195.29339 * 9 8 6 11 11 N 1.46896 * 109.46970 * 315.29555 * 9 8 6 12 12 C 1.50705 * 109.46866 * 75.29437 * 9 8 6 13 13 H 1.08001 * 119.99853 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99536 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00556 * 359.97438 * 14 12 9 16 16 Si 1.86810 * 119.99733 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.46966 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46889 * 119.99877 * 16 14 12 19 19 H 1.48497 * 109.46949 * 239.99687 * 16 14 12 20 20 C 1.38195 * 119.95431 * 0.56502 * 8 6 4 21 21 C 1.50703 * 119.96064 * 179.70805 * 20 8 6 22 22 H 1.08999 * 109.47317 * 270.01920 * 1 2 3 23 23 H 1.08997 * 109.47494 * 30.02124 * 1 2 3 24 24 H 1.08999 * 109.47303 * 150.02052 * 1 2 3 25 25 H 1.07998 * 119.97383 * 359.97438 * 3 2 1 26 26 H 0.96704 * 114.00117 * 90.00260 * 7 6 4 27 27 H 1.00896 * 111.00150 * 60.00093 * 11 9 8 28 28 H 1.00905 * 111.00095 * 183.94925 * 11 9 8 29 29 H 0.96999 * 120.00127 * 179.97438 * 15 14 12 30 30 H 1.09002 * 109.47152 * 269.72455 * 21 20 8 31 31 H 1.09001 * 109.46980 * 149.72555 * 21 20 8 32 32 H 1.09004 * 109.47113 * 29.72536 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2009 -0.0005 5 17 4.4456 2.7053 -0.0012 6 6 4.2742 -0.0013 -0.0005 7 8 5.6334 -0.0021 -0.0016 8 6 3.5789 -1.2011 0.0057 9 6 4.3298 -2.5077 0.0118 10 1 3.6513 -3.3179 -0.2550 11 7 5.4268 -2.4465 -0.9633 12 6 4.8933 -2.7567 1.3871 13 1 4.7243 -2.0406 2.1777 14 6 5.6247 -3.8986 1.6359 15 7 5.8302 -4.7709 0.6733 16 14 6.3227 -4.2077 3.3409 17 1 5.9516 -3.0847 4.2387 18 1 5.7689 -5.4757 3.8801 19 1 7.8020 -4.3089 3.2593 20 6 2.1970 -1.1978 0.0000 21 6 1.4412 -2.5017 0.0001 22 1 -0.3634 0.0003 1.0276 23 1 -0.3634 0.8897 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6558 2.1329 -0.0004 26 1 6.0274 -0.0019 0.8815 27 1 6.0700 -1.7027 -0.7376 28 1 5.9058 -3.3325 -1.0247 29 1 6.3451 -5.5741 0.8483 30 1 1.2590 -2.8160 -1.0276 31 1 0.4891 -2.3697 0.5140 32 1 2.0291 -3.2623 0.5139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261041349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:07 Heat of formation + Delta-G solvation = -38.833336 kcal Electronic energy + Delta-G solvation = -17180.520727 eV Core-core repulsion = 14359.402224 eV Total energy + Delta-G solvation = -2821.118503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.70332 -36.63937 -36.18310 -34.60744 -32.02263 -31.71050 -30.14436 -26.92033 -25.88255 -25.51837 -22.94659 -20.57972 -19.70879 -17.47746 -16.66940 -15.98384 -15.42063 -14.84974 -14.47394 -13.87369 -13.51130 -13.16854 -12.88830 -12.71247 -12.55907 -12.31644 -12.13736 -11.74805 -11.38703 -11.33762 -11.13620 -10.83671 -10.79428 -10.57097 -10.43531 -10.15842 -9.95694 -9.34501 -8.64115 -7.95322 -7.80232 -7.07147 -6.10989 -4.31028 1.61448 1.82344 2.55712 3.16728 3.26342 3.29234 4.00506 4.28613 4.75742 5.08709 5.15126 5.30686 5.53254 5.60004 5.77925 5.83614 6.00660 6.05266 6.15284 6.19156 6.50575 6.56749 6.61568 6.81135 6.97535 7.02274 7.29221 7.67662 7.69114 8.06132 8.28305 8.66298 9.04945 9.26733 9.46762 10.83855 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.008189 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.774961 B = 3418.420993 C = 4132.114171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.067 4.067 5 Cl -0.082 7.082 6 C 0.125 3.875 7 O -0.475 6.475 8 C -0.036 4.036 9 C 0.244 3.756 10 H 0.053 0.947 11 N -0.854 5.854 12 C -0.546 4.546 13 H 0.052 0.948 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.072 4.072 21 C -0.116 4.116 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.124 0.876 26 H 0.386 0.614 27 H 0.330 0.670 28 H 0.350 0.650 29 H 0.265 0.735 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 8.454 0.052 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.094 4.094 5 Cl -0.053 7.053 6 C 0.079 3.921 7 O -0.284 6.284 8 C -0.038 4.038 9 C 0.133 3.867 10 H 0.071 0.929 11 N -0.391 5.391 12 C -0.585 4.585 13 H 0.070 0.930 14 C -0.134 4.134 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.073 4.073 21 C -0.172 4.172 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.142 0.858 26 H 0.242 0.758 27 H 0.145 0.855 28 H 0.165 0.835 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.415 8.572 -1.139 11.391 hybrid contribution 1.262 -0.224 2.370 2.694 sum -6.153 8.348 1.231 10.443 Atomic orbital electron populations 1.20732 0.91236 1.02460 1.01980 1.19572 0.95748 0.91964 1.02082 1.20510 0.91278 0.98032 1.04301 1.21334 0.92590 0.86019 1.09455 1.98313 1.77453 1.32383 1.97186 1.17940 0.83633 0.89600 1.00955 1.84693 1.15157 1.95434 1.33081 1.20762 0.92863 0.96499 0.93627 1.17990 0.90811 0.87288 0.90571 0.92908 1.59529 1.16785 1.11185 1.51558 1.21780 1.33979 1.06169 0.96610 0.92972 1.24985 0.95793 0.95472 0.97121 1.69762 1.39980 1.10997 1.31958 0.86509 0.78777 0.78283 0.84252 1.19811 1.20859 1.20898 1.19617 0.92979 0.94853 0.99858 1.20862 0.99271 0.95005 1.02103 0.91483 0.92010 0.91246 0.85792 0.75789 0.85466 0.83468 0.92465 0.91497 0.92139 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.19 36.01 0.33 -0.97 16 2 C -0.09 -1.51 5.88 -104.60 -0.62 -2.12 16 3 C -0.12 -1.98 9.48 -39.57 -0.38 -2.36 16 4 C -0.07 -1.20 6.33 -39.36 -0.25 -1.45 16 5 Cl -0.08 -1.30 28.51 -51.86 -1.48 -2.78 16 6 C 0.12 2.51 6.48 -39.19 -0.25 2.25 16 7 O -0.47 -9.26 9.67 -19.49 -0.19 -9.45 16 8 C -0.04 -0.77 4.90 -104.48 -0.51 -1.28 16 9 C 0.24 5.88 2.40 -70.02 -0.17 5.72 16 10 H 0.05 1.37 5.92 -51.93 -0.31 1.06 16 11 N -0.85 -20.86 9.06 -6.65 -0.06 -20.92 16 12 C -0.55 -13.94 8.56 -34.44 -0.29 -14.23 16 13 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 14 C 0.07 1.79 5.38 -17.82 -0.10 1.70 16 15 N -0.89 -23.80 11.54 55.43 0.64 -23.16 16 16 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C -0.07 -1.35 5.88 -104.64 -0.62 -1.97 16 21 C -0.12 -1.94 8.42 36.01 0.30 -1.64 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 24 H 0.07 0.79 6.69 -51.93 -0.35 0.44 16 25 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.39 6.56 9.06 45.56 0.41 6.97 16 27 H 0.33 7.82 5.90 -39.29 -0.23 7.58 16 28 H 0.35 9.07 7.08 -39.29 -0.28 8.79 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.84 6.69 -51.93 -0.35 0.49 16 32 H 0.08 1.63 6.37 -51.93 -0.33 1.30 16 LS Contribution 278.72 15.07 4.20 4.20 Total: -1.00 -27.46 278.72 -7.11 -34.57 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -2.66 Total: 18.67 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -2.54 Total: -16.35 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.58 Total: -44.08 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.19 Total: -9.45 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.48 Total: -2.78 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.46 -7.11 -34.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.265 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds