Wall clock time and date at job start Mon Mar 30 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38296 * 119.93871 * 2 1 4 4 C 1.38208 * 120.04218 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 120.03957 * 179.97438 * 4 3 2 6 6 C 1.38859 * 119.92471 * 359.97438 * 4 3 2 7 7 O 1.35919 * 120.05987 * 179.97438 * 6 4 3 8 8 C 1.38671 * 119.87933 * 359.73067 * 6 4 3 9 9 C 1.50699 * 120.02303 * 180.26745 * 8 6 4 10 10 H 1.08994 * 109.47028 * 195.29339 * 9 8 6 11 11 N 1.46896 * 109.46970 * 315.29555 * 9 8 6 12 12 C 1.50705 * 109.46866 * 75.29437 * 9 8 6 13 13 H 1.08001 * 119.99853 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99536 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00556 * 359.97438 * 14 12 9 16 16 Si 1.86810 * 119.99733 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.46966 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46889 * 119.99877 * 16 14 12 19 19 H 1.48497 * 109.46949 * 239.99687 * 16 14 12 20 20 C 1.38195 * 119.95431 * 0.56502 * 8 6 4 21 21 C 1.50703 * 119.96064 * 179.70805 * 20 8 6 22 22 H 1.08999 * 109.47317 * 270.01920 * 1 2 3 23 23 H 1.08997 * 109.47494 * 30.02124 * 1 2 3 24 24 H 1.08999 * 109.47303 * 150.02052 * 1 2 3 25 25 H 1.07998 * 119.97383 * 359.97438 * 3 2 1 26 26 H 0.96704 * 114.00117 * 90.00260 * 7 6 4 27 27 H 1.00896 * 111.00150 * 60.00093 * 11 9 8 28 28 H 1.00905 * 111.00095 * 183.94925 * 11 9 8 29 29 H 0.96999 * 120.00127 * 179.97438 * 15 14 12 30 30 H 1.09002 * 109.47152 * 269.72455 * 21 20 8 31 31 H 1.09001 * 109.46980 * 149.72555 * 21 20 8 32 32 H 1.09004 * 109.47113 * 29.72536 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2009 -0.0005 5 17 4.4456 2.7053 -0.0012 6 6 4.2742 -0.0013 -0.0005 7 8 5.6334 -0.0021 -0.0016 8 6 3.5789 -1.2011 0.0057 9 6 4.3298 -2.5077 0.0118 10 1 3.6513 -3.3179 -0.2550 11 7 5.4268 -2.4465 -0.9633 12 6 4.8933 -2.7567 1.3871 13 1 4.7243 -2.0406 2.1777 14 6 5.6247 -3.8986 1.6359 15 7 5.8302 -4.7709 0.6733 16 14 6.3227 -4.2077 3.3409 17 1 5.9516 -3.0847 4.2387 18 1 5.7689 -5.4757 3.8801 19 1 7.8020 -4.3089 3.2593 20 6 2.1970 -1.1978 0.0000 21 6 1.4412 -2.5017 0.0001 22 1 -0.3634 0.0003 1.0276 23 1 -0.3634 0.8897 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6558 2.1329 -0.0004 26 1 6.0274 -0.0019 0.8815 27 1 6.0700 -1.7027 -0.7376 28 1 5.9058 -3.3325 -1.0247 29 1 6.3451 -5.5741 0.8483 30 1 1.2590 -2.8160 -1.0276 31 1 0.4891 -2.3697 0.5140 32 1 2.0291 -3.2623 0.5139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261041349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:07 Heat of formation + Delta-G solvation = -57.091152 kcal Electronic energy + Delta-G solvation = -17181.312446 eV Core-core repulsion = 14359.402224 eV Total energy + Delta-G solvation = -2821.910222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13276 -38.05503 -37.54601 -36.37590 -33.70652 -33.10780 -31.75100 -28.35640 -27.74752 -26.77270 -24.63406 -21.96829 -21.28450 -19.03110 -18.46782 -17.54878 -16.94900 -16.47285 -16.08354 -15.25293 -15.13136 -14.67559 -14.45299 -14.14559 -13.85450 -13.59278 -13.39025 -13.31664 -13.01165 -12.90663 -12.76105 -12.47560 -12.34674 -11.98302 -11.90479 -11.77516 -11.57356 -11.03011 -10.55598 -9.44641 -9.15308 -9.02901 -8.07608 -6.34956 0.22599 0.41948 1.21266 1.35771 1.39973 1.49281 2.35652 2.63744 3.07673 3.35267 3.92671 3.99708 4.26876 4.36564 4.54213 4.71425 4.72275 4.84551 4.91374 4.94062 5.05787 5.20732 5.27832 5.28008 5.38939 5.59727 5.65970 5.82518 6.01122 6.14005 6.67295 6.84417 7.07173 7.27281 7.47030 8.85054 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020587 B = 0.008189 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.774961 B = 3418.420993 C = 4132.114171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.086 4.086 3 C -0.115 4.115 4 C -0.074 4.074 5 Cl -0.066 7.066 6 C 0.105 3.895 7 O -0.484 6.484 8 C -0.072 4.072 9 C 0.249 3.751 10 H 0.026 0.974 11 N -0.853 5.853 12 C -0.549 4.549 13 H 0.045 0.955 14 C 0.025 3.975 15 N -0.914 5.914 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.088 4.088 21 C -0.110 4.110 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.157 0.843 26 H 0.392 0.608 27 H 0.332 0.668 28 H 0.338 0.662 29 H 0.266 0.734 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 10.060 0.679 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.101 4.101 5 Cl -0.037 7.037 6 C 0.059 3.941 7 O -0.294 6.294 8 C -0.073 4.073 9 C 0.139 3.861 10 H 0.044 0.956 11 N -0.388 5.388 12 C -0.589 4.589 13 H 0.063 0.937 14 C -0.175 4.175 15 N -0.554 5.554 16 Si 0.782 3.218 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.089 4.089 21 C -0.167 4.167 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.175 0.825 26 H 0.249 0.751 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.040 10.197 -0.508 13.637 hybrid contribution 1.717 -0.649 2.143 2.821 sum -7.323 9.548 1.635 12.144 Atomic orbital electron populations 1.20844 0.87835 1.04126 1.03501 1.20010 0.98063 0.90741 0.99790 1.20955 0.90653 0.99465 1.02286 1.21426 0.93444 0.86047 1.09210 1.98314 1.77358 1.30904 1.97097 1.18059 0.83643 0.90225 1.02150 1.84649 1.15492 1.95485 1.33789 1.20648 0.94188 0.95579 0.96919 1.17783 0.90240 0.88451 0.89637 0.95618 1.59543 1.16846 1.10495 1.51951 1.21937 1.33835 1.05941 0.97181 0.93703 1.25675 0.96228 0.95372 1.00260 1.69864 1.40642 1.11340 1.33512 0.85553 0.77967 0.77936 0.80378 1.19539 1.20780 1.20680 1.19913 0.92277 0.96707 0.99978 1.20823 0.99944 0.93396 1.02496 0.89819 0.89653 0.90407 0.82542 0.75135 0.85182 0.84826 0.92461 0.90871 0.88896 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.19 71.24 0.65 -1.46 16 2 C -0.09 -2.53 5.88 -19.85 -0.12 -2.64 16 3 C -0.12 -3.37 9.48 22.28 0.21 -3.16 16 4 C -0.07 -2.54 6.33 22.41 0.14 -2.39 16 5 Cl -0.07 -1.96 28.51 -2.72 -0.08 -2.04 16 6 C 0.11 4.21 6.48 22.52 0.15 4.36 16 7 O -0.48 -19.15 9.67 -92.64 -0.90 -20.04 16 8 C -0.07 -3.12 4.90 -19.77 -0.10 -3.21 16 9 C 0.25 12.44 2.40 43.43 0.10 12.54 16 10 H 0.03 1.41 5.92 -2.39 -0.01 1.40 16 11 N -0.85 -43.08 9.06 -174.96 -1.59 -44.67 16 12 C -0.55 -28.74 8.56 25.60 0.22 -28.52 16 13 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 14 C 0.03 1.32 5.38 84.65 0.46 1.77 16 15 N -0.91 -50.15 11.54 21.45 0.25 -49.90 16 16 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 C -0.09 -3.22 5.88 -19.88 -0.12 -3.34 16 21 C -0.11 -3.63 8.42 71.24 0.60 -3.03 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 24 H 0.08 1.44 6.69 -2.39 -0.02 1.42 16 25 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 26 H 0.39 13.64 9.06 -74.05 -0.67 12.97 16 27 H 0.33 16.23 5.90 -89.70 -0.53 15.70 16 28 H 0.34 18.19 7.08 -89.69 -0.63 17.56 16 29 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 2.37 6.69 -2.39 -0.02 2.35 16 32 H 0.05 2.08 6.37 -2.38 -0.02 2.07 16 Total: -1.00 -59.56 278.72 1.27 -58.30 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.65 Total: 43.37 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 2.20 Total: -29.08 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -1.34 Total: -94.57 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.90 Total: -20.04 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -59.56 1.27 -58.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.205 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds