Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 119.93621 * 2 1 4 4 C 1.38157 * 120.07387 * 179.76541 * 3 2 1 5 5 C 1.50693 * 120.01935 * 180.27618 * 4 3 2 6 6 H 1.08998 * 109.46927 * 145.25850 * 5 4 3 7 7 N 1.46897 * 109.47569 * 25.25788 * 5 4 3 8 8 C 1.50708 * 109.47048 * 265.25636 * 5 4 3 9 9 H 1.07992 * 119.99815 * 34.89440 * 8 5 4 10 10 C 1.37878 * 119.99883 * 214.89068 * 8 5 4 11 11 N 1.31514 * 120.00015 * 184.79882 * 10 8 5 12 12 Si 1.86801 * 120.00070 * 4.79495 * 10 8 5 13 13 H 1.48504 * 109.46920 * 84.88368 * 12 10 8 14 14 H 1.48500 * 109.47097 * 204.88505 * 12 10 8 15 15 H 1.48503 * 109.47399 * 324.88274 * 12 10 8 16 16 C 1.38705 * 119.95442 * 0.53732 * 4 3 2 17 17 O 1.35928 * 120.05784 * 179.74689 * 16 4 3 18 18 C 1.38817 * 119.88303 * 359.71873 * 16 4 3 19 19 Cl 1.73601 * 120.03833 * 179.97438 * 18 16 4 20 20 C 1.38243 * 119.94352 * 180.27882 * 2 1 3 21 21 C 1.50702 * 119.97639 * 359.97438 * 20 2 1 22 22 H 1.08992 * 109.47388 * 269.71884 * 1 2 3 23 23 H 1.09010 * 109.47072 * 149.72058 * 1 2 3 24 24 H 1.09005 * 109.47483 * 29.72430 * 1 2 3 25 25 H 1.07999 * 119.95980 * 0.02562 * 3 2 1 26 26 H 1.00902 * 111.00540 * 173.41834 * 7 5 4 27 27 H 1.00899 * 111.00088 * 297.38040 * 7 5 4 28 28 H 0.97001 * 120.00213 * 179.97438 * 11 10 8 29 29 H 0.96700 * 113.99892 * 269.97442 * 17 16 4 30 30 H 1.08999 * 109.47791 * 90.00084 * 21 20 2 31 31 H 1.09003 * 109.47133 * 210.00137 * 21 20 2 32 32 H 1.08997 * 109.47401 * 329.99481 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5786 1.2016 0.0049 5 6 4.3294 2.5082 0.0112 6 1 5.2405 2.4009 0.5997 7 7 3.4853 3.5552 0.6020 8 6 4.6865 2.8892 -1.4025 9 1 4.0112 2.6545 -2.2120 10 6 5.8754 3.5374 -1.6624 11 7 6.1447 3.9538 -2.8805 12 14 7.1035 3.8241 -0.2844 13 1 7.9570 2.6196 -0.1235 14 1 7.9557 4.9940 -0.6164 15 1 6.3740 4.0868 0.9822 16 6 4.2741 0.0016 -0.0015 17 8 5.6334 0.0024 -0.0019 18 6 3.5795 -1.2003 -0.0068 19 17 4.4459 -2.7047 -0.0154 20 6 2.1970 -1.1979 -0.0058 21 6 1.4417 -2.5019 -0.0116 22 1 -0.3634 -0.0050 1.0276 23 1 -0.3634 -0.8875 -0.5182 24 1 -0.3634 0.8925 -0.5096 25 1 1.6554 2.1326 0.0004 26 1 4.0017 4.4145 0.7163 27 1 2.6538 3.7037 0.0501 28 1 6.9809 4.4101 -3.0633 29 1 6.0264 0.0068 -0.8854 30 1 1.2591 -2.8117 -1.0406 31 1 2.0299 -3.2648 0.4985 32 1 0.4897 -2.3727 0.5033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = -39.013953 kcal Electronic energy + Delta-G solvation = -17013.137460 eV Core-core repulsion = 14192.011124 eV Total energy + Delta-G solvation = -2821.126336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69743 -36.65676 -36.24005 -35.00676 -32.31684 -31.23337 -31.01537 -27.28388 -26.55007 -25.27304 -22.26190 -21.42335 -19.48037 -17.42528 -17.29223 -16.22800 -15.41152 -14.84099 -14.51985 -14.26612 -13.91191 -13.35493 -12.98598 -12.75166 -12.72010 -12.42043 -12.23715 -11.97371 -11.75296 -11.56110 -11.21269 -11.03951 -10.95104 -10.63747 -10.41904 -10.02400 -9.92643 -9.50671 -8.81741 -8.09467 -7.95824 -7.43997 -6.29782 -4.35152 1.60242 1.73277 2.51658 3.20500 3.28338 3.33004 3.96926 4.24569 4.73132 5.03285 5.05650 5.25732 5.39003 5.47103 5.60408 5.71481 5.78396 5.90621 5.98241 6.01330 6.15470 6.24285 6.43118 6.60797 6.65090 6.94663 7.16700 7.29030 7.40551 8.14311 8.22908 8.26806 8.49219 8.75306 9.31443 10.81760 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.008056 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.830034 B = 3474.916175 C = 4213.709729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.092 4.092 4 C -0.036 4.036 5 C 0.211 3.789 6 H 0.063 0.937 7 N -0.852 5.852 8 C -0.547 4.547 9 H 0.073 0.927 10 C 0.080 3.920 11 N -0.888 5.888 12 Si 0.875 3.125 13 H -0.269 1.269 14 H -0.289 1.289 15 H -0.262 1.262 16 C 0.114 3.886 17 O -0.486 6.486 18 C -0.059 4.059 19 Cl -0.076 7.076 20 C -0.093 4.093 21 C -0.111 4.111 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.331 0.669 27 H 0.326 0.674 28 H 0.267 0.733 29 H 0.392 0.608 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -9.199 4.950 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.111 4.111 4 C -0.038 4.038 5 C 0.101 3.899 6 H 0.081 0.919 7 N -0.380 5.380 8 C -0.587 4.587 9 H 0.091 0.909 10 C -0.125 4.125 11 N -0.524 5.524 12 Si 0.702 3.298 13 H -0.194 1.194 14 H -0.216 1.216 15 H -0.187 1.187 16 C 0.068 3.932 17 O -0.296 6.296 18 C -0.086 4.086 19 Cl -0.047 7.047 20 C -0.094 4.094 21 C -0.168 4.168 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.249 0.751 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.699 -9.740 6.074 13.821 hybrid contribution 1.248 0.621 -0.972 1.700 sum -6.451 -9.118 5.102 12.280 Atomic orbital electron populations 1.20743 0.91178 1.02557 1.01965 1.19611 0.95806 0.91961 1.01787 1.20823 0.93417 0.97289 0.99571 1.20465 0.93618 0.95260 0.94457 1.18306 0.91737 0.85234 0.94581 0.91939 1.59599 1.10796 1.12008 1.55637 1.21539 1.05918 1.38722 0.92490 0.90892 1.25087 0.97634 0.94259 0.95475 1.69910 1.24672 1.37826 1.19990 0.86867 0.81701 0.78390 0.82846 1.19390 1.21567 1.18669 1.17925 0.83656 0.89846 1.01778 1.84700 1.15118 1.96067 1.33760 1.21119 0.91910 0.86042 1.09548 1.98303 1.77047 1.32324 1.97073 1.19235 0.90859 0.95696 1.03643 1.20775 0.99732 0.94023 1.02224 0.91444 0.91673 0.91503 0.85237 0.85762 0.86273 0.92293 0.75086 0.91339 0.91405 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.19 36.01 0.33 -0.94 16 2 C -0.09 -1.45 5.88 -104.60 -0.62 -2.06 16 3 C -0.09 -1.69 8.92 -39.60 -0.35 -2.04 16 4 C -0.04 -0.76 5.05 -104.48 -0.53 -1.29 16 5 C 0.21 4.81 2.35 -70.02 -0.16 4.65 16 6 H 0.06 1.53 4.85 -51.93 -0.25 1.27 16 7 N -0.85 -17.51 8.76 -6.65 -0.06 -17.57 16 8 C -0.55 -14.28 9.11 -34.44 -0.31 -14.59 16 9 H 0.07 2.12 8.06 -52.49 -0.42 1.69 16 10 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 11 N -0.89 -25.56 13.96 55.43 0.77 -24.78 16 12 Si 0.88 20.62 26.99 -169.99 -4.59 16.04 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.26 -6.02 6.82 56.52 0.39 -5.63 16 16 C 0.11 2.31 6.67 -39.19 -0.26 2.05 16 17 O -0.49 -9.80 12.10 -19.51 -0.24 -10.04 16 18 C -0.06 -1.06 6.33 -39.36 -0.25 -1.31 16 19 Cl -0.08 -1.21 26.84 -51.86 -1.39 -2.60 16 20 C -0.09 -1.49 5.88 -104.61 -0.62 -2.11 16 21 C -0.11 -1.37 8.79 36.01 0.32 -1.05 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.67 6.69 -51.92 -0.35 0.32 16 24 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 25 H 0.13 2.21 6.36 -52.49 -0.33 1.88 16 26 H 0.33 6.78 9.08 -39.29 -0.36 6.42 16 27 H 0.33 6.24 7.33 -39.29 -0.29 5.95 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.39 7.05 9.06 45.56 0.41 7.47 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.82 6.90 -51.93 -0.36 0.47 16 32 H 0.07 0.71 6.70 -51.93 -0.35 0.36 16 LS Contribution 281.03 15.07 4.24 4.24 Total: -1.00 -29.09 281.03 -6.52 -35.61 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -2.71 Total: 15.75 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.55 Total: -16.64 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.72 Total: -42.35 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.24 Total: -10.04 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.59 Total: 16.04 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.39 Total: -2.60 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.09 -6.52 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.403 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds