Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38281 * 119.93621 * 2 1 4 4 C 1.38157 * 120.07387 * 179.76541 * 3 2 1 5 5 C 1.50693 * 120.01935 * 180.27618 * 4 3 2 6 6 H 1.08998 * 109.46927 * 145.25850 * 5 4 3 7 7 N 1.46897 * 109.47569 * 25.25788 * 5 4 3 8 8 C 1.50708 * 109.47048 * 265.25636 * 5 4 3 9 9 H 1.07992 * 119.99815 * 34.89440 * 8 5 4 10 10 C 1.37878 * 119.99883 * 214.89068 * 8 5 4 11 11 N 1.31514 * 120.00015 * 184.79882 * 10 8 5 12 12 Si 1.86801 * 120.00070 * 4.79495 * 10 8 5 13 13 H 1.48504 * 109.46920 * 84.88368 * 12 10 8 14 14 H 1.48500 * 109.47097 * 204.88505 * 12 10 8 15 15 H 1.48503 * 109.47399 * 324.88274 * 12 10 8 16 16 C 1.38705 * 119.95442 * 0.53732 * 4 3 2 17 17 O 1.35928 * 120.05784 * 179.74689 * 16 4 3 18 18 C 1.38817 * 119.88303 * 359.71873 * 16 4 3 19 19 Cl 1.73601 * 120.03833 * 179.97438 * 18 16 4 20 20 C 1.38243 * 119.94352 * 180.27882 * 2 1 3 21 21 C 1.50702 * 119.97639 * 359.97438 * 20 2 1 22 22 H 1.08992 * 109.47388 * 269.71884 * 1 2 3 23 23 H 1.09010 * 109.47072 * 149.72058 * 1 2 3 24 24 H 1.09005 * 109.47483 * 29.72430 * 1 2 3 25 25 H 1.07999 * 119.95980 * 0.02562 * 3 2 1 26 26 H 1.00902 * 111.00540 * 173.41834 * 7 5 4 27 27 H 1.00899 * 111.00088 * 297.38040 * 7 5 4 28 28 H 0.97001 * 120.00213 * 179.97438 * 11 10 8 29 29 H 0.96700 * 113.99892 * 269.97442 * 17 16 4 30 30 H 1.08999 * 109.47791 * 90.00084 * 21 20 2 31 31 H 1.09003 * 109.47133 * 210.00137 * 21 20 2 32 32 H 1.08997 * 109.47401 * 329.99481 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5786 1.2016 0.0049 5 6 4.3294 2.5082 0.0112 6 1 5.2405 2.4009 0.5997 7 7 3.4853 3.5552 0.6020 8 6 4.6865 2.8892 -1.4025 9 1 4.0112 2.6545 -2.2120 10 6 5.8754 3.5374 -1.6624 11 7 6.1447 3.9538 -2.8805 12 14 7.1035 3.8241 -0.2844 13 1 7.9570 2.6196 -0.1235 14 1 7.9557 4.9940 -0.6164 15 1 6.3740 4.0868 0.9822 16 6 4.2741 0.0016 -0.0015 17 8 5.6334 0.0024 -0.0019 18 6 3.5795 -1.2003 -0.0068 19 17 4.4459 -2.7047 -0.0154 20 6 2.1970 -1.1979 -0.0058 21 6 1.4417 -2.5019 -0.0116 22 1 -0.3634 -0.0050 1.0276 23 1 -0.3634 -0.8875 -0.5182 24 1 -0.3634 0.8925 -0.5096 25 1 1.6554 2.1326 0.0004 26 1 4.0017 4.4145 0.7163 27 1 2.6538 3.7037 0.0501 28 1 6.9809 4.4101 -3.0633 29 1 6.0264 0.0068 -0.8854 30 1 1.2591 -2.8117 -1.0406 31 1 2.0299 -3.2648 0.4985 32 1 0.4897 -2.3727 0.5033 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = -60.176976 kcal Electronic energy + Delta-G solvation = -17014.055158 eV Core-core repulsion = 14192.011124 eV Total energy + Delta-G solvation = -2822.044033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09690 -38.07142 -37.61234 -36.66673 -34.22696 -32.61742 -32.32473 -28.82689 -27.97530 -26.74830 -23.79225 -22.85965 -21.01349 -19.30264 -18.90240 -17.68643 -16.88627 -16.54134 -16.06384 -15.82508 -15.12226 -14.82687 -14.67963 -14.21803 -13.94910 -13.68653 -13.54935 -13.40622 -13.12918 -13.00364 -12.86187 -12.49097 -12.35562 -11.92276 -11.87023 -11.80125 -11.63353 -11.16134 -10.87157 -9.60444 -9.38440 -9.04352 -8.39586 -6.47116 0.21298 0.34930 1.17778 1.31206 1.35799 1.43878 2.25909 2.57412 2.98130 3.33899 3.79469 3.95633 4.14842 4.28970 4.35658 4.52171 4.64958 4.78537 4.82949 4.91830 4.93595 4.98720 5.21023 5.25362 5.34452 5.41725 5.61453 5.66077 5.92253 6.11114 6.47573 6.60299 6.74917 6.82598 7.22842 8.75647 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.008056 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.830034 B = 3474.916175 C = 4213.709729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.072 4.072 5 C 0.220 3.780 6 H 0.047 0.953 7 N -0.841 5.841 8 C -0.537 4.537 9 H 0.033 0.967 10 C 0.034 3.966 11 N -0.934 5.934 12 Si 0.935 3.065 13 H -0.267 1.267 14 H -0.288 1.288 15 H -0.252 1.252 16 C 0.089 3.911 17 O -0.497 6.497 18 C -0.070 4.070 19 Cl -0.061 7.061 20 C -0.089 4.089 21 C -0.110 4.110 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.136 0.864 26 H 0.332 0.668 27 H 0.334 0.666 28 H 0.268 0.732 29 H 0.395 0.605 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 -10.528 6.270 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.073 4.073 5 C 0.110 3.890 6 H 0.065 0.935 7 N -0.369 5.369 8 C -0.577 4.577 9 H 0.051 0.949 10 C -0.167 4.167 11 N -0.573 5.573 12 Si 0.760 3.240 13 H -0.193 1.193 14 H -0.214 1.214 15 H -0.175 1.175 16 C 0.043 3.957 17 O -0.308 6.308 18 C -0.097 4.097 19 Cl -0.032 7.032 20 C -0.090 4.090 21 C -0.166 4.166 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.154 0.846 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.078 0.922 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.422 -11.076 7.408 16.320 hybrid contribution 1.650 0.931 -1.410 2.362 sum -7.772 -10.145 5.998 14.118 Atomic orbital electron populations 1.20853 0.87807 1.04032 1.03597 1.20070 0.98128 0.90874 0.99619 1.21010 0.92544 0.98845 0.99595 1.20415 0.94894 0.94506 0.97506 1.18058 0.92005 0.86979 0.91983 0.93497 1.59527 1.10638 1.11621 1.55132 1.21638 1.04894 1.37831 0.93304 0.94904 1.25766 0.99370 0.94219 0.97343 1.70032 1.25493 1.39649 1.22094 0.85908 0.79484 0.78110 0.80479 1.19259 1.21445 1.17545 1.18148 0.83566 0.90742 1.03278 1.84668 1.15711 1.96207 1.34225 1.21263 0.92883 0.86058 1.09473 1.98301 1.76971 1.30955 1.96993 1.19767 0.90343 0.97573 1.01331 1.20885 1.00411 0.91794 1.03537 0.89529 0.89509 0.90834 0.84599 0.85700 0.85331 0.92247 0.74801 0.89914 0.91192 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.19 71.24 0.65 -1.43 16 2 C -0.09 -2.52 5.88 -19.85 -0.12 -2.64 16 3 C -0.10 -3.61 8.92 22.26 0.20 -3.41 16 4 C -0.07 -3.01 5.05 -19.77 -0.10 -3.11 16 5 C 0.22 10.12 2.35 43.42 0.10 10.23 16 6 H 0.05 2.30 4.85 -2.39 -0.01 2.29 16 7 N -0.84 -34.17 8.76 -174.96 -1.53 -35.70 16 8 C -0.54 -28.81 9.11 25.60 0.23 -28.58 16 9 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 10 C 0.03 1.84 5.47 84.65 0.46 2.30 16 11 N -0.93 -55.34 13.96 21.45 0.30 -55.05 16 12 Si 0.94 43.23 26.99 68.60 1.85 45.08 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.25 -11.08 6.82 99.48 0.68 -10.40 16 16 C 0.09 3.59 6.67 22.52 0.15 3.74 16 17 O -0.50 -20.38 12.10 -92.73 -1.12 -21.50 16 18 C -0.07 -2.41 6.33 22.41 0.14 -2.27 16 19 Cl -0.06 -1.85 26.84 -2.72 -0.07 -1.92 16 20 C -0.09 -2.62 5.88 -19.86 -0.12 -2.74 16 21 C -0.11 -2.28 8.79 71.24 0.63 -1.65 16 22 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.09 1.35 6.69 -2.38 -0.02 1.34 16 24 H 0.07 1.37 8.08 -2.38 -0.02 1.35 16 25 H 0.14 4.50 6.36 -2.91 -0.02 4.48 16 26 H 0.33 13.35 9.08 -89.69 -0.81 12.53 16 27 H 0.33 12.66 7.33 -89.70 -0.66 12.00 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.39 14.75 9.06 -74.06 -0.67 14.08 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.45 6.90 -2.39 -0.02 1.43 16 32 H 0.09 1.49 6.70 -2.39 -0.02 1.47 16 Total: -1.00 -63.62 281.03 0.68 -62.94 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.98 Total: 35.71 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 2.24 Total: -29.56 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -1.23 Total: -90.75 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.12 Total: -21.50 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.85 Total: 45.08 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -63.62 0.68 -62.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.764 kcal (2) G-P(sol) polarization free energy of solvation -63.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds