Wall clock time and date at job start Mon Mar 30 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48500 * 109.47209 * 270.00266 * 3 2 1 5 5 H 1.48504 * 109.46889 * 29.99668 * 3 2 1 6 6 H 1.48497 * 109.47435 * 149.99440 * 3 2 1 7 7 C 1.39950 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00081 * 197.88785 * 7 2 1 9 9 C 1.40974 * 119.99928 * 17.89452 * 7 2 1 10 10 C 1.40624 * 120.30008 * 24.67890 * 9 7 2 11 11 C 1.37927 * 120.36861 * 179.72627 * 10 9 7 12 12 C 1.38277 * 120.68303 * 0.30139 * 11 10 9 13 13 C 1.39867 * 120.19554 * 359.94936 * 12 11 10 14 14 C 1.46552 * 133.88565 * 180.02562 * 13 12 11 15 15 C 1.34318 * 106.83707 * 180.02562 * 14 13 12 16 16 C 1.50698 * 125.09490 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47162 * 269.97155 * 16 15 14 18 18 F 1.39896 * 109.47069 * 29.97759 * 16 15 14 19 19 F 1.39902 * 109.46842 * 149.97438 * 16 15 14 20 20 N 1.36721 * 109.81078 * 0.02562 * 15 14 13 21 21 H 0.96993 * 124.99448 * 179.97438 * 20 15 14 22 22 C 1.36964 * 110.00652 * 359.97438 * 20 15 14 23 23 H 0.96994 * 120.00446 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.81918 * 0.02562 * 10 9 7 25 25 H 1.07995 * 119.65854 * 180.27744 * 11 10 9 26 26 H 1.08002 * 119.90307 * 179.97438 * 12 11 10 27 27 H 1.07999 * 126.58276 * 0.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4402 0.7001 7 6 2.0083 -1.2120 0.0005 8 1 3.0492 -1.2344 0.2878 9 6 1.3546 -2.4035 -0.3741 10 6 0.2282 -2.3606 -1.2148 11 6 -0.4091 -3.5259 -1.5867 12 6 0.0433 -4.7524 -1.1359 13 6 1.1582 -4.8250 -0.2945 14 6 1.8781 -5.9297 0.3450 15 6 2.8833 -5.3834 1.0488 16 6 3.8856 -6.1539 1.8689 17 9 3.4074 -6.2971 3.1758 18 9 4.0789 -7.4181 1.3019 19 9 5.1012 -5.4618 1.8904 20 7 2.8608 -4.0235 0.9096 21 1 3.4882 -3.4114 1.3249 22 6 1.8222 -3.6527 0.0974 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1371 -1.4103 -1.5752 25 1 -1.2705 -3.4800 -2.2365 26 1 -0.4655 -5.6569 -1.4347 27 1 1.6452 -6.9813 0.2657 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261210219.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:18 Heat of formation + Delta-G solvation = -107.758853 kcal Electronic energy + Delta-G solvation = -18228.331054 eV Core-core repulsion = 14728.966731 eV Total energy + Delta-G solvation = -3499.364323 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.97129 -47.51733 -47.45163 -40.25986 -35.97495 -33.66447 -31.01605 -29.09600 -28.68948 -25.42556 -25.01709 -21.21218 -20.57939 -20.09525 -18.34898 -18.31544 -17.93791 -16.93790 -16.15148 -15.14684 -14.48961 -14.40397 -14.15869 -13.91858 -13.65697 -13.63238 -13.51306 -13.47221 -13.15139 -12.83728 -12.37371 -11.79320 -11.53544 -11.19942 -11.14490 -10.68252 -10.32453 -10.04050 -9.61320 -9.37244 -8.62285 -7.25532 -7.00691 -6.84242 -4.40795 2.00547 2.74482 2.83692 2.98609 3.01104 3.03401 3.40860 3.61341 3.80858 4.11343 4.51494 4.57812 4.64655 5.50434 5.89148 5.92346 6.19657 6.41151 6.60018 6.73532 6.93931 7.09797 7.23808 7.47218 7.59532 7.89124 8.02899 8.08736 8.25642 8.49803 8.65946 8.77063 10.02861 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.006929 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.562477 B = 4040.268631 C = 4940.991970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.074 0.926 9 C 0.116 3.884 10 C -0.183 4.183 11 C -0.092 4.092 12 C -0.212 4.212 13 C -0.084 4.084 14 C -0.147 4.147 15 C -0.055 4.055 16 C 0.538 3.462 17 F -0.177 7.177 18 F -0.170 7.170 19 F -0.183 7.183 20 N -0.558 5.558 21 H 0.411 0.589 22 C 0.051 3.949 23 H 0.283 0.717 24 H 0.124 0.876 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -5.407 1.764 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.205 4.205 11 C -0.111 4.111 12 C -0.233 4.233 13 C -0.087 4.087 14 C -0.176 4.176 15 C -0.165 4.165 16 C 0.483 3.517 17 F -0.159 7.159 18 F -0.152 7.152 19 F -0.165 7.165 20 N -0.159 5.159 21 H 0.247 0.753 22 C -0.056 4.056 23 H 0.094 0.906 24 H 0.141 0.859 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.315 -5.165 1.879 6.987 hybrid contribution 0.813 0.903 0.455 1.298 sum 5.128 -4.261 2.335 7.064 Atomic orbital electron populations 1.69825 1.07542 1.29514 1.33689 1.25841 0.94755 1.01250 0.92356 0.86284 0.80383 0.80459 0.79496 1.19081 1.20158 1.18697 1.19370 0.97825 0.91533 1.40353 0.90800 1.16758 0.92917 0.88171 0.90981 1.20897 0.99837 0.97220 1.02516 1.20550 0.98470 0.92746 0.99330 1.19722 1.00094 0.96442 1.07006 1.18738 0.97945 0.90702 1.01353 1.21366 0.96427 0.98270 1.01540 1.19495 1.02308 0.85569 1.09171 1.17557 0.79083 0.77454 0.77594 1.93223 1.88085 1.95830 1.38723 1.93183 1.95295 1.41799 1.84896 1.93177 1.47498 1.79312 1.96504 1.40878 1.27936 1.03628 1.43424 0.75284 1.18655 0.92024 0.95951 0.98932 0.90563 0.85869 0.88870 0.88890 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.20 10.97 55.55 0.61 -18.59 15 2 C 0.08 1.83 5.13 -17.33 -0.09 1.74 15 3 Si 0.91 17.75 29.60 -169.99 -5.03 12.72 15 4 H -0.27 -5.16 7.11 56.52 0.40 -4.75 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.46 -11.50 9.04 -37.91 -0.34 -11.84 15 8 H 0.07 1.75 7.91 -52.49 -0.41 1.33 15 9 C 0.12 2.94 5.58 -106.73 -0.60 2.35 15 10 C -0.18 -4.57 8.68 -38.80 -0.34 -4.91 15 11 C -0.09 -2.09 10.00 -39.68 -0.40 -2.49 15 12 C -0.21 -4.70 10.11 -38.96 -0.39 -5.10 15 13 C -0.08 -1.91 6.37 -105.16 -0.67 -2.58 15 14 C -0.15 -2.87 10.60 -37.62 -0.40 -3.27 15 15 C -0.06 -1.04 6.45 -81.80 -0.53 -1.57 15 16 C 0.54 8.63 3.53 36.00 0.13 8.76 15 17 F -0.18 -2.82 17.30 2.25 0.04 -2.78 15 18 F -0.17 -2.58 16.97 2.25 0.04 -2.54 15 19 F -0.18 -2.86 17.25 2.25 0.04 -2.82 15 20 N -0.56 -11.46 5.96 -6.64 -0.04 -11.50 15 21 H 0.41 7.64 8.96 -40.82 -0.37 7.27 15 22 C 0.05 1.22 7.00 -83.56 -0.58 0.63 15 23 H 0.28 6.31 8.30 -40.82 -0.34 5.98 15 24 H 0.12 3.15 6.15 -52.49 -0.32 2.82 15 25 H 0.09 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.09 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.14 2.34 8.06 -52.49 -0.42 1.92 15 LS Contribution 257.33 15.07 3.88 3.88 Total: -1.00 -25.90 257.33 -6.18 -32.08 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -1.51 Total: 7.82 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -4.21 Total: -18.26 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.57 Total: -30.09 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.12 Total: -8.15 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.90 -6.18 -32.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210219.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.678 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds