Wall clock time and date at job start Mon Mar 30 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38267 * 119.95972 * 2 1 4 4 C 1.38373 * 120.09361 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.98412 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.02937 * 359.97438 * 4 3 2 7 7 C 1.50697 * 120.03265 * 180.02562 * 6 4 3 8 8 C 1.38688 * 119.93347 * 0.02562 * 6 4 3 9 9 O 1.35894 * 120.04866 * 179.97438 * 8 6 4 10 10 C 1.38129 * 119.96764 * 180.24983 * 2 1 3 11 11 C 1.50697 * 120.01803 * 0.04747 * 10 2 1 12 12 H 1.09002 * 109.47127 * 347.35158 * 11 10 2 13 13 N 1.46902 * 109.47127 * 227.35443 * 11 10 2 14 14 C 1.50701 * 109.47157 * 107.35112 * 11 10 2 15 15 H 1.07994 * 119.99799 * 5.31065 * 14 11 10 16 16 C 1.37877 * 119.99749 * 185.31257 * 14 11 10 17 17 N 1.31518 * 120.00427 * 6.39320 * 16 14 11 18 18 Si 1.86801 * 119.99817 * 186.39979 * 16 14 11 19 19 H 1.48506 * 109.47205 * 94.98906 * 18 16 14 20 20 H 1.48505 * 109.47014 * 214.98141 * 18 16 14 21 21 H 1.48493 * 109.47175 * 334.98427 * 18 16 14 22 22 H 1.09000 * 109.47215 * 96.11735 * 1 2 3 23 23 H 1.09003 * 109.46570 * 216.10951 * 1 2 3 24 24 H 1.08997 * 109.47452 * 336.11081 * 1 2 3 25 25 H 1.07991 * 119.95544 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.47546 * 269.98121 * 7 6 4 27 27 H 1.09005 * 109.47034 * 29.98089 * 7 6 4 28 28 H 1.08997 * 109.47082 * 149.97942 * 7 6 4 29 29 H 0.96704 * 114.00110 * 90.00529 * 9 8 6 30 30 H 1.00898 * 110.99792 * 170.70968 * 13 11 10 31 31 H 1.00895 * 110.99757 * 294.65836 * 13 11 10 32 32 H 0.96996 * 120.00476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1979 0.0000 4 6 3.5812 1.2011 0.0005 5 17 4.4453 2.7068 -0.0001 6 6 4.2761 0.0056 0.0016 7 6 5.7830 0.0090 0.0028 8 6 3.5846 -1.1967 0.0016 9 8 4.2651 -2.3730 0.0021 10 6 2.1970 -1.1966 -0.0052 11 6 1.4432 -2.5015 -0.0120 12 1 0.3930 -2.3156 0.2132 13 7 2.0100 -3.3997 1.0029 14 6 1.5598 -3.1419 -1.3711 15 1 2.1926 -2.6975 -2.1250 16 6 0.8584 -4.2952 -1.6522 17 7 -0.0074 -4.7670 -0.7819 18 14 1.1381 -5.1879 -3.2691 19 1 2.1395 -6.2667 -3.0722 20 1 -0.1416 -5.7796 -3.7357 21 1 1.6387 -4.2272 -4.2847 22 1 -0.3634 -0.1095 -1.0218 23 1 -0.3632 -0.8303 0.6057 24 1 -0.3634 0.9396 0.4162 25 1 1.6562 2.1323 0.0004 26 1 6.1472 0.0090 -1.0246 27 1 6.1439 0.9003 0.5162 28 1 6.1480 -0.8797 0.5176 29 1 4.4616 -2.7133 0.8857 30 1 1.4325 -4.2181 1.1244 31 1 2.9572 -3.6570 0.7695 32 1 -0.5005 -5.5786 -0.9794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261246067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:25 Heat of formation + Delta-G solvation = -56.929583 kcal Electronic energy + Delta-G solvation = -17139.804027 eV Core-core repulsion = 14317.900812 eV Total energy + Delta-G solvation = -2821.903216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18223 -38.07373 -37.36401 -36.41997 -34.28025 -32.98454 -30.62565 -30.07583 -27.78946 -25.78442 -24.70192 -22.61628 -21.06639 -18.89858 -18.64948 -17.51562 -16.93630 -16.58070 -15.92602 -15.55766 -15.06426 -14.81057 -14.49267 -14.15239 -13.83995 -13.60809 -13.42874 -13.23778 -13.15025 -13.02624 -12.78179 -12.65552 -12.46403 -11.99349 -11.82015 -11.71849 -11.65440 -10.98869 -10.54115 -9.38860 -9.33996 -9.11380 -8.12820 -6.30729 0.29678 0.30900 1.16163 1.34105 1.37421 1.46705 2.36039 2.62041 3.08698 3.43756 3.85953 4.01846 4.08681 4.36293 4.47023 4.65705 4.71148 4.77974 4.81086 4.88808 4.97433 5.17737 5.18684 5.33252 5.42838 5.47879 5.66433 5.77065 5.97980 6.15078 6.69335 6.85421 6.92594 7.13561 7.39839 8.84547 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027936 B = 0.006847 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.057256 B = 4088.170567 C = 4411.065407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.085 4.085 3 C -0.115 4.115 4 C -0.042 4.042 5 Cl -0.060 7.060 6 C -0.121 4.121 7 C -0.102 4.102 8 C 0.116 3.884 9 O -0.487 6.487 10 C -0.076 4.076 11 C 0.246 3.754 12 H 0.037 0.963 13 N -0.843 5.843 14 C -0.539 4.539 15 H 0.033 0.967 16 C 0.027 3.973 17 N -0.913 5.913 18 Si 0.948 3.052 19 H -0.276 1.276 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.395 0.605 30 H 0.336 0.664 31 H 0.325 0.675 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 10.450 3.315 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.069 4.069 5 Cl -0.031 7.031 6 C -0.123 4.123 7 C -0.158 4.158 8 C 0.071 3.929 9 O -0.298 6.298 10 C -0.077 4.077 11 C 0.137 3.863 12 H 0.054 0.946 13 N -0.374 5.374 14 C -0.579 4.579 15 H 0.052 0.948 16 C -0.173 4.173 17 N -0.553 5.553 18 Si 0.774 3.226 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.205 1.205 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.171 0.829 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.253 0.747 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.731 11.109 3.254 13.391 hybrid contribution 0.040 -1.508 -1.287 1.983 sum 6.771 9.601 1.967 11.912 Atomic orbital electron populations 1.20745 0.89856 1.03094 1.02365 1.19792 0.97273 0.91486 1.00018 1.21010 0.91865 0.98487 1.02032 1.20495 0.92182 0.86434 1.07743 1.98313 1.76931 1.30818 1.97065 1.20170 0.98261 0.90686 1.03160 1.20669 0.88513 1.03711 1.02905 1.17952 0.88906 0.85007 1.01065 1.84817 1.75421 1.35681 1.33920 1.20768 0.93818 0.96621 0.96528 1.17811 0.93090 0.86357 0.89086 0.94556 1.59620 1.06966 1.22206 1.48614 1.21826 1.26640 1.09469 0.99926 0.94839 1.25562 0.94070 0.98005 0.99651 1.69947 1.25443 1.22868 1.37017 0.85713 0.77566 0.78721 0.80586 1.20187 1.20578 1.20474 0.91677 0.92274 0.89064 0.82915 0.91027 0.90090 0.90467 0.74687 0.85270 0.86039 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.52 9.34 71.24 0.67 -2.85 16 2 C -0.08 -3.16 5.88 -19.88 -0.12 -3.28 16 3 C -0.12 -3.64 9.46 22.31 0.21 -3.43 16 4 C -0.04 -1.30 6.31 22.31 0.14 -1.16 16 5 Cl -0.06 -1.51 27.29 -2.72 -0.07 -1.59 16 6 C -0.12 -4.01 5.90 -19.75 -0.12 -4.13 16 7 C -0.10 -2.66 9.39 71.23 0.67 -1.99 16 8 C 0.12 4.49 6.43 22.50 0.14 4.63 16 9 O -0.49 -18.04 10.16 -92.35 -0.94 -18.98 16 10 C -0.08 -3.25 4.90 -19.76 -0.10 -3.35 16 11 C 0.25 12.03 2.48 43.42 0.11 12.14 16 12 H 0.04 1.94 5.56 -2.39 -0.01 1.93 16 13 N -0.84 -38.24 9.02 -174.95 -1.58 -39.82 16 14 C -0.54 -29.30 8.33 25.60 0.21 -29.09 16 15 H 0.03 1.93 7.75 -2.91 -0.02 1.90 16 16 C 0.03 1.48 5.37 84.65 0.45 1.93 16 17 N -0.91 -50.19 12.21 21.45 0.26 -49.92 16 18 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.06 2.22 6.26 -2.39 -0.01 2.21 16 24 H 0.09 2.35 8.04 -2.39 -0.02 2.33 16 25 H 0.15 3.87 8.06 -2.92 -0.02 3.85 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.84 6.90 -2.38 -0.02 1.83 16 28 H 0.08 1.86 7.53 -2.39 -0.02 1.84 16 29 H 0.39 11.56 7.92 -74.05 -0.59 10.98 16 30 H 0.34 16.43 7.90 -89.70 -0.71 15.72 16 31 H 0.33 13.81 5.57 -89.70 -0.50 13.31 16 32 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -59.33 279.42 1.36 -57.97 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.61 Total: 37.18 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 2.28 Total: -30.56 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -1.32 Total: -89.74 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.94 Total: -18.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.59 kcal Total: -59.33 1.36 -57.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.039 kcal (2) G-P(sol) polarization free energy of solvation -59.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds