Wall clock time and date at job start Mon Mar 30 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.98014 * 2 1 4 4 C 1.38236 * 120.11898 * 180.25768 * 3 2 1 5 5 C 1.38193 * 120.07703 * 359.48390 * 4 3 2 6 6 C 1.50697 * 120.02157 * 180.23587 * 5 4 3 7 7 H 1.09004 * 109.47001 * 220.25615 * 6 5 4 8 8 N 1.46896 * 109.47176 * 340.25433 * 6 5 4 9 9 C 1.52995 * 109.47285 * 100.25718 * 6 5 4 10 10 C 1.50704 * 109.47213 * 174.99895 * 9 6 5 11 11 H 1.07996 * 119.99989 * 0.02562 * 10 9 6 12 12 C 1.37883 * 119.99867 * 179.97438 * 10 9 6 13 13 N 1.31510 * 119.99950 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99919 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47007 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47193 * 119.99939 * 14 12 10 17 17 H 1.48502 * 109.47032 * 240.00318 * 14 12 10 18 18 C 1.38667 * 119.95387 * 0.49199 * 5 4 3 19 19 O 1.35926 * 120.05856 * 179.79216 * 18 5 4 20 20 C 1.38222 * 119.97509 * 179.97438 * 2 1 3 21 21 Cl 1.73596 * 120.04220 * 359.97438 * 20 2 1 22 22 H 1.09005 * 109.47317 * 90.00594 * 1 2 3 23 23 H 1.09007 * 109.47514 * 210.00197 * 1 2 3 24 24 H 1.08998 * 109.47302 * 330.00174 * 1 2 3 25 25 H 1.08002 * 119.93641 * 359.97198 * 3 2 1 26 26 H 1.08000 * 119.95685 * 179.72313 * 4 3 2 27 27 H 1.00904 * 110.99904 * 59.99845 * 8 6 5 28 28 H 1.00903 * 111.00446 * 183.95606 * 8 6 5 29 29 H 1.09000 * 109.47419 * 295.00192 * 9 6 5 30 30 H 1.09007 * 109.47449 * 54.99726 * 9 6 5 31 31 H 0.97002 * 120.00062 * 180.02562 * 13 12 10 32 32 H 0.96704 * 113.99536 * 269.97644 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5803 1.2012 -0.0054 5 6 4.2759 0.0070 0.0000 6 6 5.7828 0.0122 -0.0005 7 1 6.1486 -0.7740 -0.6610 8 7 6.2679 1.3152 -0.4747 9 6 6.2942 -0.2363 1.4199 10 6 7.7965 -0.3534 1.3997 11 1 8.3329 -0.2596 0.4671 12 6 8.4862 -0.5793 2.5720 13 7 7.8331 -0.6921 3.7079 14 14 10.3484 -0.7239 2.5471 15 1 10.8390 -0.5604 1.1550 16 1 10.9385 0.3327 3.4076 17 1 10.7481 -2.0595 3.0586 18 6 3.5861 -1.1959 0.0005 19 8 4.2681 -2.3717 0.0015 20 6 2.1976 -1.1973 0.0005 21 17 1.3301 -2.7010 0.0019 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6566 2.1324 -0.0005 26 1 4.1174 2.1382 -0.0099 27 1 5.9420 2.0611 0.1216 28 1 7.2744 1.3224 -0.5456 29 1 6.0032 0.5954 2.0615 30 1 5.8628 -1.1603 1.8050 31 1 8.3183 -0.8506 4.5327 32 1 4.4654 -2.7127 -0.8817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251101.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:43 Heat of formation + Delta-G solvation = -40.229031 kcal Electronic energy + Delta-G solvation = -16641.470077 eV Core-core repulsion = 13820.291052 eV Total energy + Delta-G solvation = -2821.179025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86625 -36.66865 -36.45706 -35.44227 -32.66636 -31.37418 -29.58542 -28.08591 -26.97891 -23.93654 -22.38096 -21.65088 -19.74020 -17.87315 -16.76971 -16.14798 -15.76350 -15.04471 -14.64132 -14.44899 -13.91320 -13.58182 -13.25466 -12.72176 -12.62977 -12.32704 -12.08257 -11.99562 -11.60396 -11.40220 -11.20682 -10.88973 -10.82300 -10.67820 -10.29931 -10.15687 -9.89244 -9.13712 -8.48061 -8.35462 -8.27051 -7.72812 -6.05999 -4.10571 1.36590 1.45626 2.32989 3.26770 3.34839 3.37578 3.76183 4.38166 4.40772 4.88281 5.08696 5.21784 5.30424 5.36187 5.57744 5.62102 5.68903 5.77819 5.95186 6.10086 6.29753 6.39246 6.58686 6.70760 6.81623 6.97306 7.51215 7.57562 7.86376 7.93930 8.03123 8.16169 8.31686 8.96320 9.54125 11.04770 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.005615 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.409671 B = 4985.595735 C = 5432.734422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.088 4.088 5 C -0.070 4.070 6 C 0.133 3.867 7 H 0.080 0.920 8 N -0.842 5.842 9 C 0.004 3.996 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.121 3.879 19 O -0.475 6.475 20 C -0.064 4.064 21 Cl -0.070 7.070 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.329 0.671 28 H 0.349 0.651 29 H 0.014 0.986 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 1.739 -8.843 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.072 4.072 6 C 0.022 3.978 7 H 0.098 0.902 8 N -0.372 5.372 9 C -0.035 4.035 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.075 3.925 19 O -0.284 6.284 20 C -0.091 4.091 21 Cl -0.041 7.041 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.145 0.855 26 H 0.152 0.848 27 H 0.141 0.859 28 H 0.162 0.838 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -13.012 1.457 -8.714 15.728 hybrid contribution 1.527 -0.333 0.678 1.704 sum -11.485 1.124 -8.036 14.062 Atomic orbital electron populations 1.20796 0.90617 1.03145 1.02423 1.19535 0.96324 0.91143 1.01460 1.20937 0.94192 0.96729 1.02108 1.20992 0.93350 0.98278 0.98006 1.20495 0.97619 0.91503 0.97539 1.20367 0.86821 0.91723 0.98932 0.90249 1.59313 1.17280 1.04503 1.56058 1.19760 0.95989 0.98056 0.89646 1.21161 0.91625 1.49931 0.93505 0.92555 1.25013 0.98425 0.95164 0.95601 1.69987 1.35484 1.48950 0.98393 0.86538 0.85673 0.77703 0.78087 1.19679 1.21063 1.20983 1.17960 0.87406 0.86207 1.00923 1.84963 1.75650 1.35139 1.32609 1.21176 0.91424 0.87058 1.09469 1.98322 1.76340 1.32408 1.96998 0.91103 0.91122 0.91321 0.85451 0.84804 0.85927 0.83762 0.96800 0.95305 0.92967 0.75979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.61 36.01 0.35 -0.87 16 2 C -0.08 -1.17 5.88 -104.61 -0.62 -1.79 16 3 C -0.12 -1.66 9.70 -39.56 -0.38 -2.05 16 4 C -0.09 -1.39 9.25 -39.60 -0.37 -1.75 16 5 C -0.07 -1.28 5.10 -104.48 -0.53 -1.81 16 6 C 0.13 2.67 2.65 -68.87 -0.18 2.49 16 7 H 0.08 1.63 7.85 -51.93 -0.41 1.22 16 8 N -0.84 -15.08 8.66 -5.66 -0.05 -15.13 16 9 C 0.00 0.10 4.60 -27.88 -0.13 -0.03 16 10 C -0.52 -14.21 8.55 -34.44 -0.29 -14.50 16 11 H 0.06 1.46 7.14 -52.49 -0.38 1.09 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.12 2.14 6.67 -39.20 -0.26 1.88 16 19 O -0.47 -8.31 12.09 -19.51 -0.24 -8.55 16 20 C -0.06 -1.01 6.33 -39.36 -0.25 -1.26 16 21 Cl -0.07 -0.99 26.84 -51.86 -1.39 -2.38 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.77 6.90 -51.92 -0.36 0.41 16 24 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.13 1.94 6.24 -52.49 -0.33 1.61 16 27 H 0.33 5.58 7.30 -39.29 -0.29 5.30 16 28 H 0.35 6.42 7.90 -39.29 -0.31 6.11 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.82 8.04 -51.92 -0.42 0.40 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.38 4.89 9.06 45.56 0.41 5.30 16 LS Contribution 286.71 15.07 4.32 4.32 Total: -1.00 -31.01 286.71 -7.30 -38.30 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -2.89 Total: 11.19 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.76 Total: -18.10 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.69 Total: -41.07 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.24 Total: -8.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.39 Total: -2.38 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.01 -7.30 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251101.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.924 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds