Wall clock time and date at job start Mon Mar 30 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.98014 * 2 1 4 4 C 1.38236 * 120.11898 * 180.25768 * 3 2 1 5 5 C 1.38193 * 120.07703 * 359.48390 * 4 3 2 6 6 C 1.50697 * 120.02157 * 180.23587 * 5 4 3 7 7 H 1.09004 * 109.47001 * 220.25615 * 6 5 4 8 8 N 1.46896 * 109.47176 * 340.25433 * 6 5 4 9 9 C 1.52995 * 109.47285 * 100.25718 * 6 5 4 10 10 C 1.50704 * 109.47213 * 174.99895 * 9 6 5 11 11 H 1.07996 * 119.99989 * 0.02562 * 10 9 6 12 12 C 1.37883 * 119.99867 * 179.97438 * 10 9 6 13 13 N 1.31510 * 119.99950 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99919 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47007 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47193 * 119.99939 * 14 12 10 17 17 H 1.48502 * 109.47032 * 240.00318 * 14 12 10 18 18 C 1.38667 * 119.95387 * 0.49199 * 5 4 3 19 19 O 1.35926 * 120.05856 * 179.79216 * 18 5 4 20 20 C 1.38222 * 119.97509 * 179.97438 * 2 1 3 21 21 Cl 1.73596 * 120.04220 * 359.97438 * 20 2 1 22 22 H 1.09005 * 109.47317 * 90.00594 * 1 2 3 23 23 H 1.09007 * 109.47514 * 210.00197 * 1 2 3 24 24 H 1.08998 * 109.47302 * 330.00174 * 1 2 3 25 25 H 1.08002 * 119.93641 * 359.97198 * 3 2 1 26 26 H 1.08000 * 119.95685 * 179.72313 * 4 3 2 27 27 H 1.00904 * 110.99904 * 59.99845 * 8 6 5 28 28 H 1.00903 * 111.00446 * 183.95606 * 8 6 5 29 29 H 1.09000 * 109.47419 * 295.00192 * 9 6 5 30 30 H 1.09007 * 109.47449 * 54.99726 * 9 6 5 31 31 H 0.97002 * 120.00062 * 180.02562 * 13 12 10 32 32 H 0.96704 * 113.99536 * 269.97644 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5803 1.2012 -0.0054 5 6 4.2759 0.0070 0.0000 6 6 5.7828 0.0122 -0.0005 7 1 6.1486 -0.7740 -0.6610 8 7 6.2679 1.3152 -0.4747 9 6 6.2942 -0.2363 1.4199 10 6 7.7965 -0.3534 1.3997 11 1 8.3329 -0.2596 0.4671 12 6 8.4862 -0.5793 2.5720 13 7 7.8331 -0.6921 3.7079 14 14 10.3484 -0.7239 2.5471 15 1 10.8390 -0.5604 1.1550 16 1 10.9385 0.3327 3.4076 17 1 10.7481 -2.0595 3.0586 18 6 3.5861 -1.1959 0.0005 19 8 4.2681 -2.3717 0.0015 20 6 2.1976 -1.1973 0.0005 21 17 1.3301 -2.7010 0.0019 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6566 2.1324 -0.0005 26 1 4.1174 2.1382 -0.0099 27 1 5.9420 2.0611 0.1216 28 1 7.2744 1.3224 -0.5456 29 1 6.0032 0.5954 2.0615 30 1 5.8628 -1.1603 1.8050 31 1 8.3183 -0.8506 4.5327 32 1 4.4654 -2.7127 -0.8817 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251101.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:43 Heat of formation + Delta-G solvation = -62.354155 kcal Electronic energy + Delta-G solvation = -16642.429495 eV Core-core repulsion = 13820.291052 eV Total energy + Delta-G solvation = -2822.138443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12349 -37.91080 -37.77620 -36.90269 -34.63940 -32.64924 -30.83018 -29.89716 -28.29839 -25.67305 -23.62121 -23.17432 -21.22170 -19.25814 -18.57618 -17.52887 -17.16421 -16.63044 -16.27590 -15.83917 -15.15800 -14.77181 -14.62708 -14.43502 -14.18911 -13.70734 -13.47411 -13.22723 -13.04659 -12.91321 -12.55922 -12.52069 -12.32435 -12.10325 -11.94473 -11.78781 -11.49033 -11.05884 -10.63038 -9.65302 -9.54981 -9.23439 -8.21782 -6.34198 0.16306 0.24277 1.15406 1.38442 1.39681 1.52143 2.37981 2.57119 3.11473 3.19902 3.65185 3.93216 4.02815 4.25199 4.32952 4.47655 4.61648 4.76238 4.82573 4.84563 4.92768 5.18541 5.25232 5.37863 5.40314 5.49126 5.61814 5.75871 5.83166 6.14643 6.36833 6.68068 6.78514 6.83263 7.35782 8.89923 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.005615 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.409671 B = 4985.595735 C = 5432.734422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 C -0.115 4.115 4 C -0.091 4.091 5 C -0.103 4.103 6 C 0.150 3.850 7 H 0.071 0.929 8 N -0.826 5.826 9 C 0.017 3.983 10 C -0.533 4.533 11 H 0.067 0.933 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.257 1.257 16 H -0.279 1.279 17 H -0.284 1.284 18 C 0.105 3.895 19 O -0.496 6.496 20 C -0.080 4.080 21 Cl -0.060 7.060 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.145 0.855 27 H 0.336 0.664 28 H 0.347 0.653 29 H -0.014 1.014 30 H -0.014 1.014 31 H 0.262 0.738 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 2.829 -9.992 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.078 4.078 3 C -0.133 4.133 4 C -0.110 4.110 5 C -0.104 4.104 6 C 0.038 3.962 7 H 0.089 0.911 8 N -0.355 5.355 9 C -0.022 4.022 10 C -0.571 4.571 11 H 0.085 0.915 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.180 1.180 16 H -0.205 1.205 17 H -0.210 1.210 18 C 0.059 3.941 19 O -0.308 6.308 20 C -0.107 4.107 21 Cl -0.031 7.031 22 H 0.108 0.892 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.184 0.816 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.004 0.996 30 H 0.004 0.996 31 H 0.071 0.929 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -13.732 2.554 -9.896 17.118 hybrid contribution 1.638 -0.685 1.022 2.049 sum -12.094 1.868 -8.874 15.116 Atomic orbital electron populations 1.20896 0.87947 1.04152 1.03881 1.20031 0.98249 0.90451 0.99095 1.21337 0.93354 0.98227 1.00401 1.21211 0.94599 0.97693 0.97473 1.20397 0.96342 0.92952 1.00741 1.19963 0.88716 0.92417 0.95108 0.91109 1.59302 1.17026 1.03645 1.55522 1.19586 0.95363 0.94693 0.92557 1.21581 0.92684 1.48917 0.93874 0.91468 1.25983 1.03753 0.94825 0.95208 1.70138 1.37653 1.50430 0.99203 0.85385 0.79283 0.77476 0.78799 1.18023 1.20523 1.21035 1.18172 0.88389 0.85928 1.01628 1.84905 1.76023 1.35511 1.34319 1.21329 0.90986 0.88344 1.10015 1.98317 1.75836 1.31991 1.96982 0.89250 0.91440 0.89041 0.81634 0.83776 0.85162 0.84024 0.99598 0.99587 0.92949 0.74191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.61 71.24 0.68 -1.34 16 2 C -0.08 -1.98 5.88 -19.86 -0.12 -2.10 16 3 C -0.12 -2.83 9.70 22.28 0.22 -2.62 16 4 C -0.09 -2.77 9.25 22.26 0.21 -2.56 16 5 C -0.10 -3.77 5.10 -19.77 -0.10 -3.87 16 6 C 0.15 6.15 2.65 44.17 0.12 6.27 16 7 H 0.07 2.98 7.85 -2.38 -0.02 2.96 16 8 N -0.83 -29.25 8.66 -171.82 -1.49 -30.74 16 9 C 0.02 0.88 4.60 29.85 0.14 1.02 16 10 C -0.53 -29.36 8.55 25.60 0.22 -29.14 16 11 H 0.07 3.48 7.14 -2.91 -0.02 3.46 16 12 C 0.00 0.01 5.46 84.66 0.46 0.47 16 13 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 14 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 18 C 0.10 3.75 6.67 22.52 0.15 3.90 16 19 O -0.50 -18.04 12.09 -92.72 -1.12 -19.16 16 20 C -0.08 -2.45 6.33 22.41 0.14 -2.31 16 21 Cl -0.06 -1.67 26.84 -2.72 -0.07 -1.74 16 22 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.07 1.29 6.90 -2.38 -0.02 1.27 16 24 H 0.09 1.26 8.09 -2.39 -0.02 1.25 16 25 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 26 H 0.14 3.94 6.24 -2.91 -0.02 3.92 16 27 H 0.34 11.21 7.30 -89.69 -0.65 10.55 16 28 H 0.35 12.55 7.90 -89.69 -0.71 11.84 16 29 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H -0.01 -0.87 8.04 -2.38 -0.02 -0.89 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.40 10.64 9.06 -74.05 -0.67 9.97 16 Total: -1.00 -68.25 286.71 0.89 -67.36 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.86 Total: 27.86 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.12 Total: -32.29 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -1.20 Total: -88.03 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.12 Total: -19.16 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.74 kcal Total: -68.25 0.89 -67.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251101.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.011 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds