Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 C 1.53001 * 109.47238 * 64.99689 * 10 9 7 13 13 N 1.46904 * 109.47012 * 185.00298 * 12 10 9 14 14 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 15 15 C 1.38271 * 119.94073 * 120.00071 * 14 10 9 16 16 C 1.38151 * 120.07593 * 180.02562 * 15 14 10 17 17 C 1.38703 * 119.95744 * 359.97438 * 16 15 14 18 18 O 1.35923 * 120.06346 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.88045 * 359.97438 * 17 16 15 20 20 Cl 1.73608 * 120.04008 * 180.02562 * 19 17 16 21 21 C 1.38250 * 119.93655 * 299.72156 * 14 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47114 * 304.99906 * 12 10 9 26 26 H 1.08989 * 109.47131 * 64.99930 * 12 10 9 27 27 H 1.00904 * 110.99671 * 180.02562 * 13 12 10 28 28 H 1.00901 * 110.99818 * 303.95295 * 13 12 10 29 29 H 1.08003 * 119.96605 * 359.97438 * 15 14 10 30 30 H 1.08001 * 120.02136 * 179.97438 * 16 15 14 31 31 H 0.96700 * 114.00400 * 89.99579 * 18 17 16 32 32 H 1.07999 * 119.98008 * 359.97438 * 21 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 6 3.0398 -3.6595 1.2970 13 7 4.0749 -4.7005 1.2429 14 6 1.4956 -4.9631 -0.1402 15 6 1.7395 -5.7957 -1.2169 16 6 1.0537 -6.9887 -1.3389 17 6 0.1198 -7.3519 -0.3798 18 8 -0.5558 -8.5255 -0.4974 19 6 -0.1229 -6.5153 0.7009 20 17 -1.2904 -6.9662 1.9041 21 6 0.5697 -5.3247 0.8206 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 3.5105 -2.6859 1.4341 26 1 2.3674 -3.8586 2.1313 27 1 4.6137 -4.7193 2.0958 28 1 3.6690 -5.6044 1.0520 29 1 2.4664 -5.5126 -1.9639 30 1 1.2446 -7.6381 -2.1804 31 1 -0.1189 -9.2754 -0.0710 32 1 0.3846 -4.6750 1.6633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -43.439295 kcal Electronic energy + Delta-G solvation = -16499.381440 eV Core-core repulsion = 13678.063207 eV Total energy + Delta-G solvation = -2821.318233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83155 -37.46918 -36.35682 -35.05504 -32.88391 -31.14185 -30.61803 -28.56989 -25.43257 -23.16778 -22.76276 -22.04364 -19.43384 -18.44351 -16.70440 -15.84771 -15.68971 -15.40221 -15.21755 -14.50535 -14.14226 -13.86762 -13.52895 -12.89018 -12.55673 -12.32880 -12.12247 -11.97448 -11.37033 -11.17183 -11.09561 -10.89945 -10.63830 -10.56082 -10.38641 -9.96822 -9.55718 -9.11447 -8.68553 -8.38775 -8.31832 -8.14243 -6.03192 -4.06265 1.26246 1.37763 2.26621 3.31812 3.36871 3.38937 3.69401 4.17022 4.43278 4.92093 5.05240 5.14389 5.33339 5.45760 5.52339 5.68195 5.81648 5.93333 6.08774 6.27141 6.37071 6.47146 6.61895 6.84797 6.92937 6.97597 7.48692 7.58986 7.64083 7.68325 7.80606 7.94884 8.34482 8.99547 9.58011 11.07691 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.005548 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.778686 B = 5045.938267 C = 5391.053857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.046 4.046 11 H 0.079 0.921 12 C 0.075 3.925 13 N -0.853 5.853 14 C -0.049 4.049 15 C -0.099 4.099 16 C -0.133 4.133 17 C 0.092 3.908 18 O -0.489 6.489 19 C -0.058 4.058 20 Cl -0.071 7.071 21 C -0.094 4.094 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.020 0.980 25 H 0.089 0.911 26 H 0.020 0.980 27 H 0.332 0.668 28 H 0.330 0.670 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.384 0.616 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -15.184 1.888 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.065 4.065 11 H 0.098 0.902 12 C -0.055 4.055 13 N -0.381 5.381 14 C -0.049 4.049 15 C -0.117 4.117 16 C -0.152 4.152 17 C 0.047 3.953 18 O -0.299 6.299 19 C -0.085 4.085 20 Cl -0.042 7.042 21 C -0.113 4.113 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.240 0.760 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.391 -14.335 1.069 14.572 hybrid contribution -0.031 0.200 1.151 1.169 sum 2.359 -14.134 2.220 14.501 Atomic orbital electron populations 1.69959 1.06064 1.26805 1.50382 1.25014 0.94804 0.99234 0.95246 0.86667 0.79570 0.83165 0.78660 1.20200 1.21358 1.20236 1.21171 0.93045 0.90634 1.51069 0.92306 1.19141 0.93246 0.90333 0.97687 1.20492 0.96967 0.91036 0.98007 0.90224 1.21880 0.92064 0.95746 0.95777 1.58879 1.28468 1.08994 1.41739 1.20358 0.95148 0.96531 0.92888 1.21147 0.99357 0.93172 0.98003 1.21301 0.96012 0.98566 0.99277 1.18091 0.95075 0.88329 0.93823 1.84871 1.49282 1.16728 1.78976 1.21370 0.96759 0.97985 0.92389 1.98346 1.57911 1.92547 1.55370 1.20967 0.95463 0.94227 1.00616 0.92886 0.96304 0.96132 0.89256 0.96186 0.85678 0.85817 0.84996 0.84990 0.76039 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.97 8.34 -34.44 -0.29 -14.26 16 8 H 0.06 1.53 7.08 -52.49 -0.37 1.16 16 9 C 0.03 0.82 4.19 -27.88 -0.12 0.70 16 10 C -0.05 -0.89 2.19 -91.77 -0.20 -1.09 16 11 H 0.08 1.58 7.87 -51.92 -0.41 1.17 16 12 C 0.08 1.32 6.02 -3.82 -0.02 1.30 16 13 N -0.85 -12.36 9.62 -10.37 -0.10 -12.46 16 14 C -0.05 -0.82 3.82 -104.61 -0.40 -1.22 16 15 C -0.10 -1.44 9.66 -39.60 -0.38 -1.82 16 16 C -0.13 -1.75 9.99 -39.44 -0.39 -2.14 16 17 C 0.09 1.29 6.70 -39.20 -0.26 1.02 16 18 O -0.49 -5.95 12.96 -19.50 -0.25 -6.20 16 19 C -0.06 -0.89 6.33 -39.36 -0.25 -1.14 16 20 Cl -0.07 -1.01 28.51 -51.86 -1.48 -2.49 16 21 C -0.09 -1.56 8.48 -39.57 -0.34 -1.90 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.49 7.58 -51.93 -0.39 0.09 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 1.75 6.82 -51.93 -0.35 1.39 16 26 H 0.02 0.35 7.20 -51.94 -0.37 -0.03 16 27 H 0.33 4.12 9.08 -39.29 -0.36 3.76 16 28 H 0.33 4.46 8.07 -39.29 -0.32 4.14 16 29 H 0.13 1.75 7.94 -52.48 -0.42 1.33 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.38 2.82 9.06 45.56 0.41 3.23 16 32 H 0.14 2.35 7.12 -52.49 -0.37 1.98 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -29.96 288.75 -7.45 -37.41 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -2.93 Total: 7.78 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.75 Total: -19.00 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.64 Total: -38.02 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.25 Total: -6.20 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.48 Total: -2.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.96 -7.45 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.033 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds