Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 C 1.53001 * 109.47238 * 64.99689 * 10 9 7 13 13 N 1.46904 * 109.47012 * 185.00298 * 12 10 9 14 14 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 15 15 C 1.38271 * 119.94073 * 120.00071 * 14 10 9 16 16 C 1.38151 * 120.07593 * 180.02562 * 15 14 10 17 17 C 1.38703 * 119.95744 * 359.97438 * 16 15 14 18 18 O 1.35923 * 120.06346 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.88045 * 359.97438 * 17 16 15 20 20 Cl 1.73608 * 120.04008 * 180.02562 * 19 17 16 21 21 C 1.38250 * 119.93655 * 299.72156 * 14 10 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47114 * 304.99906 * 12 10 9 26 26 H 1.08989 * 109.47131 * 64.99930 * 12 10 9 27 27 H 1.00904 * 110.99671 * 180.02562 * 13 12 10 28 28 H 1.00901 * 110.99818 * 303.95295 * 13 12 10 29 29 H 1.08003 * 119.96605 * 359.97438 * 15 14 10 30 30 H 1.08001 * 120.02136 * 179.97438 * 16 15 14 31 31 H 0.96700 * 114.00400 * 89.99579 * 18 17 16 32 32 H 1.07999 * 119.98008 * 359.97438 * 21 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 6 3.0398 -3.6595 1.2970 13 7 4.0749 -4.7005 1.2429 14 6 1.4956 -4.9631 -0.1402 15 6 1.7395 -5.7957 -1.2169 16 6 1.0537 -6.9887 -1.3389 17 6 0.1198 -7.3519 -0.3798 18 8 -0.5558 -8.5255 -0.4974 19 6 -0.1229 -6.5153 0.7009 20 17 -1.2904 -6.9662 1.9041 21 6 0.5697 -5.3247 0.8206 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 3.5105 -2.6859 1.4341 26 1 2.3674 -3.8586 2.1313 27 1 4.6137 -4.7193 2.0958 28 1 3.6690 -5.6044 1.0520 29 1 2.4664 -5.5126 -1.9639 30 1 1.2446 -7.6381 -2.1804 31 1 -0.1189 -9.2754 -0.0710 32 1 0.3846 -4.6750 1.6633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254958.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -64.824860 kcal Electronic energy + Delta-G solvation = -16500.308787 eV Core-core repulsion = 13678.063207 eV Total energy + Delta-G solvation = -2822.245580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00487 -38.68662 -37.49500 -36.40309 -34.79643 -32.64017 -31.79304 -30.09113 -27.15479 -24.65545 -24.18200 -23.39708 -20.89773 -19.48500 -18.59584 -17.27981 -16.89210 -16.78809 -16.39618 -16.23114 -15.52353 -15.20456 -14.66699 -14.29438 -14.11007 -14.00965 -13.53071 -13.23233 -13.00959 -12.79984 -12.68554 -12.36165 -12.31165 -11.97860 -11.71854 -11.51607 -11.32354 -11.06300 -10.52544 -9.85565 -9.57425 -9.36665 -8.16687 -6.26751 0.10202 0.21782 1.10921 1.42371 1.44405 1.52139 2.42565 2.54669 3.14793 3.16927 3.73397 3.81375 3.89462 4.29220 4.29946 4.39267 4.48461 4.62090 4.87241 4.89381 5.08315 5.13143 5.23271 5.30822 5.50134 5.51346 5.73395 5.79900 5.86164 6.25769 6.28724 6.69876 6.77177 6.88910 7.42096 8.94603 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026070 B = 0.005548 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.778686 B = 5045.938267 C = 5391.053857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.042 3.958 10 C -0.033 4.033 11 H 0.074 0.926 12 C 0.086 3.914 13 N -0.845 5.845 14 C -0.068 4.068 15 C -0.095 4.095 16 C -0.123 4.123 17 C 0.104 3.896 18 O -0.493 6.493 19 C -0.071 4.071 20 Cl -0.067 7.067 21 C -0.105 4.105 22 H 0.262 0.738 23 H -0.007 1.007 24 H -0.013 1.013 25 H 0.067 0.933 26 H 0.017 0.983 27 H 0.347 0.653 28 H 0.340 0.660 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.409 0.591 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -16.639 1.285 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.083 0.917 9 C 0.005 3.995 10 C -0.052 4.052 11 H 0.093 0.907 12 C -0.045 4.045 13 N -0.375 5.375 14 C -0.068 4.068 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.059 3.941 18 O -0.306 6.306 19 C -0.098 4.098 20 Cl -0.038 7.038 21 C -0.124 4.124 22 H 0.070 0.930 23 H 0.012 0.988 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.035 0.965 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.268 0.732 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.678 -15.828 0.483 16.257 hybrid contribution -0.472 0.518 1.337 1.510 sum 3.206 -15.310 1.820 15.748 Atomic orbital electron populations 1.70104 1.07812 1.27644 1.51880 1.25920 0.95604 1.03148 0.94979 0.85583 0.78274 0.78493 0.79207 1.19238 1.21313 1.19127 1.21593 0.93533 0.91740 1.50002 0.91692 1.18945 0.93598 0.92239 0.94767 1.20144 0.95833 0.90550 0.98624 0.90724 1.21585 0.92341 0.95744 0.94829 1.58745 1.27313 1.08706 1.42725 1.20101 0.96114 0.96148 0.94469 1.21309 0.99608 0.93226 0.97158 1.21582 0.94748 0.98095 0.99661 1.18181 0.94312 0.88675 0.92966 1.84812 1.49648 1.16880 1.79257 1.21459 0.97060 0.97956 0.93296 1.98342 1.57703 1.92394 1.55348 1.20822 0.96334 0.94839 1.00399 0.92964 0.98826 0.99461 0.91477 0.96530 0.84009 0.84733 0.83495 0.81679 0.73197 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.53 -29.12 8.34 25.60 0.21 -28.91 16 8 H 0.06 3.41 7.08 -2.91 -0.02 3.39 16 9 C 0.04 2.15 4.19 29.85 0.13 2.27 16 10 C -0.03 -1.27 2.19 -11.54 -0.03 -1.30 16 11 H 0.07 2.96 7.87 -2.38 -0.02 2.94 16 12 C 0.09 3.04 6.02 86.30 0.52 3.56 16 13 N -0.84 -23.38 9.62 -186.72 -1.80 -25.18 16 14 C -0.07 -2.26 3.82 -19.85 -0.08 -2.34 16 15 C -0.09 -2.58 9.66 22.26 0.22 -2.36 16 16 C -0.12 -2.83 9.99 22.36 0.22 -2.61 16 17 C 0.10 2.65 6.70 22.52 0.15 2.80 16 18 O -0.49 -10.38 12.96 -92.68 -1.20 -11.58 16 19 C -0.07 -2.09 6.33 22.41 0.14 -1.95 16 20 Cl -0.07 -1.86 28.51 -2.72 -0.08 -1.94 16 21 C -0.11 -3.52 8.48 22.28 0.19 -3.33 16 22 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 23 H -0.01 -0.37 7.58 -2.38 -0.02 -0.38 16 24 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 25 H 0.07 2.66 6.82 -2.38 -0.02 2.64 16 26 H 0.02 0.59 7.20 -2.39 -0.02 0.57 16 27 H 0.35 8.03 9.08 -89.69 -0.81 7.21 16 28 H 0.34 8.58 8.07 -89.69 -0.72 7.85 16 29 H 0.15 3.52 7.94 -2.91 -0.02 3.50 16 30 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.41 4.48 9.06 -74.06 -0.67 3.81 16 32 H 0.12 4.29 7.12 -2.91 -0.02 4.27 16 Total: -1.00 -65.42 288.75 0.34 -65.09 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -1.04 Total: 17.76 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 2.14 Total: -33.65 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -1.51 Total: -81.54 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.20 Total: -11.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -65.42 0.34 -65.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254958.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.261 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds