Wall clock time and date at job start Mon Mar 30 2020 06:29:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 120.00287 * 2 1
4 4 H 1.48496 * 109.47222 * 270.00000 * 3 2 1
5 5 H 1.48500 * 109.47004 * 30.00185 * 3 2 1
6 6 H 1.48501 * 109.46997 * 149.99800 * 3 2 1
7 7 C 1.37878 * 119.99712 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00169 * 0.02562 * 7 2 1
9 9 C 1.50696 * 119.99784 * 179.97438 * 7 2 1
10 10 C 1.53005 * 109.47172 * 175.07829 * 9 7 2
11 11 H 1.08997 * 109.47286 * 54.57402 * 10 9 7
12 12 C 1.53007 * 109.46753 * 294.57902 * 10 9 7
13 13 N 1.46898 * 109.47066 * 175.60830 * 12 10 9
14 14 C 1.50700 * 109.47349 * 174.57856 * 10 9 7
15 15 C 1.38268 * 119.94980 * 59.99840 * 14 10 9
16 16 C 1.38128 * 120.06712 * 179.97438 * 15 14 10
17 17 C 1.38764 * 119.96898 * 359.97438 * 16 15 14
18 18 O 1.35901 * 120.04596 * 179.97438 * 17 16 15
19 19 C 1.38681 * 119.90341 * 0.02562 * 17 16 15
20 20 C 1.38287 * 119.93344 * 359.74510 * 19 17 16
21 21 Cl 1.73602 * 119.98885 * 180.25505 * 20 19 17
22 22 H 0.97006 * 119.99417 * 0.02562 * 1 2 3
23 23 H 1.09000 * 109.47348 * 55.08017 * 9 7 2
24 24 H 1.09000 * 109.47436 * 295.07339 * 9 7 2
25 25 H 1.08998 * 109.47362 * 55.60947 * 12 10 9
26 26 H 1.09002 * 109.46839 * 295.61080 * 12 10 9
27 27 H 1.00895 * 110.99963 * 174.77336 * 13 12 10
28 28 H 1.00898 * 111.00248 * 298.74075 * 13 12 10
29 29 H 1.07999 * 119.96739 * 359.95335 * 15 14 10
30 30 H 1.08002 * 120.01489 * 179.97438 * 16 15 14
31 31 H 0.96704 * 113.99352 * 90.00652 * 18 17 16
32 32 H 1.08005 * 120.03607 * 180.02562 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4400 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5115 -1.1941 0.0000
10 6 4.0215 -2.6313 0.1245
11 1 3.5807 -3.2428 -0.6628
12 6 3.6263 -3.1961 1.4905
13 7 4.0232 -4.6082 1.5699
14 6 5.5225 -2.6450 -0.0097
15 6 6.3020 -1.9346 0.8845
16 6 7.6780 -1.9460 0.7641
17 6 8.2787 -2.6715 -0.2548
18 8 9.6323 -2.6834 -0.3750
19 6 7.4956 -3.3836 -1.1509
20 6 6.1187 -3.3733 -1.0238
21 17 5.1374 -4.2695 -2.1408
22 1 -0.4849 0.8401 -0.0004
23 1 3.8752 -0.6053 0.8420
24 1 3.8745 -0.7593 -0.9313
25 1 2.5470 -3.1143 1.6190
26 1 4.1295 -2.6324 2.2761
27 1 3.8506 -4.9810 2.4914
28 1 3.5540 -5.1559 0.8643
29 1 5.8345 -1.3700 1.6776
30 1 8.2860 -1.3904 1.4628
31 1 10.0646 -3.3943 0.1178
32 1 7.9610 -3.9494 -1.9446
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261256407.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:29:25
Heat of formation + Delta-G solvation = -38.472803 kcal
Electronic energy + Delta-G solvation = -16689.344182 eV
Core-core repulsion = 13868.241312 eV
Total energy + Delta-G solvation = -2821.102870 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 255.077 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.77249 -37.51663 -36.11819 -35.10253 -32.80068 -31.34296 -30.58986 -28.84189
-25.65672 -23.13370 -22.58510 -21.83153 -19.38876 -18.42406 -17.10497 -15.87735
-15.80696 -15.37345 -14.89544 -14.19101 -14.13499 -13.74931 -13.72660 -13.32205
-12.67439 -12.54112 -12.19663 -11.82321 -11.62327 -11.25411 -11.01988 -10.90726
-10.55859 -10.49215 -10.11181 -9.79711 -9.64276 -9.21276 -8.65741 -8.58715
-8.22881 -8.07980 -6.08430 -4.06580 1.35550 1.41838 2.42438 3.29032
3.36622 3.39273 3.72235 4.28872 4.41814 4.97134 5.05543 5.17814
5.20892 5.26317 5.58277 5.74741 5.78716 5.98659 6.07699 6.31578
6.38810 6.44562 6.59363 6.67697 6.79918 6.88091 7.16539 7.34825
7.56720 7.64134 7.73042 7.83756 8.47523 8.94714 9.53805 11.04540
Molecular weight = 255.08amu
Principal moments of inertia in cm(-1)
A = 0.021116 B = 0.007103 C = 0.006399
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1325.691528 B = 3941.285321 C = 4374.883559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.069 3.931
3 Si 0.875 3.125
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.264 1.264
7 C -0.517 4.517
8 H 0.073 0.927
9 C -0.004 4.004
10 C -0.045 4.045
11 H 0.084 0.916
12 C 0.075 3.925
13 N -0.853 5.853
14 C -0.030 4.030
15 C -0.089 4.089
16 C -0.139 4.139
17 C 0.092 3.908
18 O -0.498 6.498
19 C -0.138 4.138
20 C -0.016 4.016
21 Cl -0.066 7.066
22 H 0.263 0.737
23 H 0.021 0.979
24 H 0.015 0.985
25 H 0.051 0.949
26 H 0.063 0.937
27 H 0.332 0.668
28 H 0.336 0.664
29 H 0.133 0.867
30 H 0.127 0.873
31 H 0.386 0.614
32 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.541 -7.885 1.886 16.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.133 4.133
3 Si 0.702 3.298
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.189 1.189
7 C -0.555 4.555
8 H 0.091 0.909
9 C -0.042 4.042
10 C -0.064 4.064
11 H 0.102 0.898
12 C -0.055 4.055
13 N -0.381 5.381
14 C -0.031 4.031
15 C -0.107 4.107
16 C -0.157 4.157
17 C 0.048 3.952
18 O -0.307 6.307
19 C -0.157 4.157
20 C -0.043 4.043
21 Cl -0.037 7.037
22 H 0.073 0.927
23 H 0.039 0.961
24 H 0.033 0.967
25 H 0.070 0.930
26 H 0.081 0.919
27 H 0.143 0.857
28 H 0.147 0.853
29 H 0.151 0.849
30 H 0.145 0.855
31 H 0.240 0.760
32 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 14.931 -7.075 1.264 16.571
hybrid contribution -0.592 0.304 0.331 0.743
sum 14.339 -6.772 1.595 15.938
Atomic orbital electron populations
1.69909 1.06257 1.26899 1.51005 1.24990 0.94685 0.99053 0.94525
0.86852 0.80413 0.83809 0.78692 1.20248 1.21392 1.18873 1.21047
0.89048 0.94410 1.50948 0.90891 1.19630 0.97319 0.90542 0.96704
1.20358 0.87747 1.00287 0.98025 0.89776 1.21806 0.99387 0.87656
0.96650 1.58811 1.66639 1.04116 1.08575 1.19999 0.97707 0.93214
0.92204 1.20863 0.92414 0.98478 0.98956 1.21412 0.95294 1.00852
0.98172 1.18113 0.82720 0.98866 0.95511 1.84843 1.15916 1.55760
1.74206 1.21131 0.91931 1.01466 1.01193 1.20554 0.90713 0.98669
0.94382 1.98344 1.70697 1.73763 1.60894 0.92715 0.96102 0.96681
0.93050 0.91893 0.85696 0.85253 0.84905 0.85463 0.75952 0.85080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16
2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
3 Si 0.87 21.41 27.57 -169.99 -4.69 16.72 16
4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
6 H -0.26 -6.16 6.40 56.52 0.36 -5.80 16
7 C -0.52 -14.06 8.80 -34.44 -0.30 -14.37 16
8 H 0.07 2.13 7.54 -52.49 -0.40 1.73 16
9 C 0.00 -0.10 3.27 -27.88 -0.09 -0.19 16
10 C -0.05 -0.87 2.06 -91.77 -0.19 -1.06 16
11 H 0.08 1.69 6.16 -51.93 -0.32 1.37 16
12 C 0.08 1.32 5.94 -3.82 -0.02 1.29 16
13 N -0.85 -12.41 9.29 -10.37 -0.10 -12.51 16
14 C -0.03 -0.53 4.50 -104.57 -0.47 -1.00 16
15 C -0.09 -1.40 8.71 -39.61 -0.34 -1.75 16
16 C -0.14 -1.93 9.99 -39.43 -0.39 -2.33 16
17 C 0.09 1.27 6.70 -39.22 -0.26 1.01 16
18 O -0.50 -5.79 13.50 -19.43 -0.26 -6.05 16
19 C -0.14 -1.99 9.77 -39.40 -0.38 -2.38 16
20 C -0.02 -0.27 6.31 -39.52 -0.25 -0.52 16
21 Cl -0.07 -1.04 27.00 -51.86 -1.40 -2.44 16
22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
23 H 0.02 0.47 6.29 -51.93 -0.33 0.15 16
24 H 0.01 0.36 7.82 -51.93 -0.41 -0.05 16
25 H 0.05 1.02 6.97 -51.93 -0.36 0.65 16
26 H 0.06 1.07 7.24 -51.93 -0.38 0.69 16
27 H 0.33 4.11 9.08 -39.29 -0.36 3.75 16
28 H 0.34 4.78 9.05 -39.29 -0.36 4.42 16
29 H 0.13 2.02 7.13 -52.49 -0.37 1.65 16
30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16
31 H 0.39 2.51 9.06 45.56 0.41 2.92 16
32 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16
LS Contribution 284.22 15.07 4.28 4.28
Total: -1.00 -30.79 284.22 -7.08 -37.87
By element:
Atomic # 1 Polarization: 10.86 SS G_CDS: -2.88 Total: 7.98 kcal
Atomic # 6 Polarization: -16.61 SS G_CDS: -2.81 Total: -19.42 kcal
Atomic # 7 Polarization: -39.62 SS G_CDS: 0.68 Total: -38.95 kcal
Atomic # 8 Polarization: -5.79 SS G_CDS: -0.26 Total: -6.05 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -4.69 Total: 16.72 kcal
Atomic # 17 Polarization: -1.04 SS G_CDS: -1.40 Total: -2.44 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -30.79 -7.08 -37.87 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261256407.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.604 kcal
(2) G-P(sol) polarization free energy of solvation -30.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds