Wall clock time and date at job start Mon Mar 30 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00287 * 2 1 4 4 H 1.48496 * 109.47222 * 270.00000 * 3 2 1 5 5 H 1.48500 * 109.47004 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46997 * 149.99800 * 3 2 1 7 7 C 1.37878 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47172 * 175.07829 * 9 7 2 11 11 H 1.08997 * 109.47286 * 54.57402 * 10 9 7 12 12 C 1.53007 * 109.46753 * 294.57902 * 10 9 7 13 13 N 1.46898 * 109.47066 * 175.60830 * 12 10 9 14 14 C 1.50700 * 109.47349 * 174.57856 * 10 9 7 15 15 C 1.38268 * 119.94980 * 59.99840 * 14 10 9 16 16 C 1.38128 * 120.06712 * 179.97438 * 15 14 10 17 17 C 1.38764 * 119.96898 * 359.97438 * 16 15 14 18 18 O 1.35901 * 120.04596 * 179.97438 * 17 16 15 19 19 C 1.38681 * 119.90341 * 0.02562 * 17 16 15 20 20 C 1.38287 * 119.93344 * 359.74510 * 19 17 16 21 21 Cl 1.73602 * 119.98885 * 180.25505 * 20 19 17 22 22 H 0.97006 * 119.99417 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47348 * 55.08017 * 9 7 2 24 24 H 1.09000 * 109.47436 * 295.07339 * 9 7 2 25 25 H 1.08998 * 109.47362 * 55.60947 * 12 10 9 26 26 H 1.09002 * 109.46839 * 295.61080 * 12 10 9 27 27 H 1.00895 * 110.99963 * 174.77336 * 13 12 10 28 28 H 1.00898 * 111.00248 * 298.74075 * 13 12 10 29 29 H 1.07999 * 119.96739 * 359.95335 * 15 14 10 30 30 H 1.08002 * 120.01489 * 179.97438 * 16 15 14 31 31 H 0.96704 * 113.99352 * 90.00652 * 18 17 16 32 32 H 1.08005 * 120.03607 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6313 0.1245 11 1 3.5807 -3.2428 -0.6628 12 6 3.6263 -3.1961 1.4905 13 7 4.0232 -4.6082 1.5699 14 6 5.5225 -2.6450 -0.0097 15 6 6.3020 -1.9346 0.8845 16 6 7.6780 -1.9460 0.7641 17 6 8.2787 -2.6715 -0.2548 18 8 9.6323 -2.6834 -0.3750 19 6 7.4956 -3.3836 -1.1509 20 6 6.1187 -3.3733 -1.0238 21 17 5.1374 -4.2695 -2.1408 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6053 0.8420 24 1 3.8745 -0.7593 -0.9313 25 1 2.5470 -3.1143 1.6190 26 1 4.1295 -2.6324 2.2761 27 1 3.8506 -4.9810 2.4914 28 1 3.5540 -5.1559 0.8643 29 1 5.8345 -1.3700 1.6776 30 1 8.2860 -1.3904 1.4628 31 1 10.0646 -3.3943 0.1178 32 1 7.9610 -3.9494 -1.9446 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:25 Heat of formation + Delta-G solvation = -38.472803 kcal Electronic energy + Delta-G solvation = -16689.344182 eV Core-core repulsion = 13868.241312 eV Total energy + Delta-G solvation = -2821.102870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.77249 -37.51663 -36.11819 -35.10253 -32.80068 -31.34296 -30.58986 -28.84189 -25.65672 -23.13370 -22.58510 -21.83153 -19.38876 -18.42406 -17.10497 -15.87735 -15.80696 -15.37345 -14.89544 -14.19101 -14.13499 -13.74931 -13.72660 -13.32205 -12.67439 -12.54112 -12.19663 -11.82321 -11.62327 -11.25411 -11.01988 -10.90726 -10.55859 -10.49215 -10.11181 -9.79711 -9.64276 -9.21276 -8.65741 -8.58715 -8.22881 -8.07980 -6.08430 -4.06580 1.35550 1.41838 2.42438 3.29032 3.36622 3.39273 3.72235 4.28872 4.41814 4.97134 5.05543 5.17814 5.20892 5.26317 5.58277 5.74741 5.78716 5.98659 6.07699 6.31578 6.38810 6.44562 6.59363 6.67697 6.79918 6.88091 7.16539 7.34825 7.56720 7.64134 7.73042 7.83756 8.47523 8.94714 9.53805 11.04540 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021116 B = 0.007103 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.691528 B = 3941.285321 C = 4374.883559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.004 4.004 10 C -0.045 4.045 11 H 0.084 0.916 12 C 0.075 3.925 13 N -0.853 5.853 14 C -0.030 4.030 15 C -0.089 4.089 16 C -0.139 4.139 17 C 0.092 3.908 18 O -0.498 6.498 19 C -0.138 4.138 20 C -0.016 4.016 21 Cl -0.066 7.066 22 H 0.263 0.737 23 H 0.021 0.979 24 H 0.015 0.985 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.332 0.668 28 H 0.336 0.664 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.386 0.614 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.541 -7.885 1.886 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.064 4.064 11 H 0.102 0.898 12 C -0.055 4.055 13 N -0.381 5.381 14 C -0.031 4.031 15 C -0.107 4.107 16 C -0.157 4.157 17 C 0.048 3.952 18 O -0.307 6.307 19 C -0.157 4.157 20 C -0.043 4.043 21 Cl -0.037 7.037 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.240 0.760 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.931 -7.075 1.264 16.571 hybrid contribution -0.592 0.304 0.331 0.743 sum 14.339 -6.772 1.595 15.938 Atomic orbital electron populations 1.69909 1.06257 1.26899 1.51005 1.24990 0.94685 0.99053 0.94525 0.86852 0.80413 0.83809 0.78692 1.20248 1.21392 1.18873 1.21047 0.89048 0.94410 1.50948 0.90891 1.19630 0.97319 0.90542 0.96704 1.20358 0.87747 1.00287 0.98025 0.89776 1.21806 0.99387 0.87656 0.96650 1.58811 1.66639 1.04116 1.08575 1.19999 0.97707 0.93214 0.92204 1.20863 0.92414 0.98478 0.98956 1.21412 0.95294 1.00852 0.98172 1.18113 0.82720 0.98866 0.95511 1.84843 1.15916 1.55760 1.74206 1.21131 0.91931 1.01466 1.01193 1.20554 0.90713 0.98669 0.94382 1.98344 1.70697 1.73763 1.60894 0.92715 0.96102 0.96681 0.93050 0.91893 0.85696 0.85253 0.84905 0.85463 0.75952 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.41 27.57 -169.99 -4.69 16.72 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.16 6.40 56.52 0.36 -5.80 16 7 C -0.52 -14.06 8.80 -34.44 -0.30 -14.37 16 8 H 0.07 2.13 7.54 -52.49 -0.40 1.73 16 9 C 0.00 -0.10 3.27 -27.88 -0.09 -0.19 16 10 C -0.05 -0.87 2.06 -91.77 -0.19 -1.06 16 11 H 0.08 1.69 6.16 -51.93 -0.32 1.37 16 12 C 0.08 1.32 5.94 -3.82 -0.02 1.29 16 13 N -0.85 -12.41 9.29 -10.37 -0.10 -12.51 16 14 C -0.03 -0.53 4.50 -104.57 -0.47 -1.00 16 15 C -0.09 -1.40 8.71 -39.61 -0.34 -1.75 16 16 C -0.14 -1.93 9.99 -39.43 -0.39 -2.33 16 17 C 0.09 1.27 6.70 -39.22 -0.26 1.01 16 18 O -0.50 -5.79 13.50 -19.43 -0.26 -6.05 16 19 C -0.14 -1.99 9.77 -39.40 -0.38 -2.38 16 20 C -0.02 -0.27 6.31 -39.52 -0.25 -0.52 16 21 Cl -0.07 -1.04 27.00 -51.86 -1.40 -2.44 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.47 6.29 -51.93 -0.33 0.15 16 24 H 0.01 0.36 7.82 -51.93 -0.41 -0.05 16 25 H 0.05 1.02 6.97 -51.93 -0.36 0.65 16 26 H 0.06 1.07 7.24 -51.93 -0.38 0.69 16 27 H 0.33 4.11 9.08 -39.29 -0.36 3.75 16 28 H 0.34 4.78 9.05 -39.29 -0.36 4.42 16 29 H 0.13 2.02 7.13 -52.49 -0.37 1.65 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.39 2.51 9.06 45.56 0.41 2.92 16 32 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 284.22 15.07 4.28 4.28 Total: -1.00 -30.79 284.22 -7.08 -37.87 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -2.88 Total: 7.98 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.81 Total: -19.42 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.68 Total: -38.95 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.26 Total: -6.05 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.69 Total: 16.72 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.40 Total: -2.44 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.79 -7.08 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.604 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds