Wall clock time and date at job start Mon Mar 30 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47046 * 304.99824 * 10 9 7 12 12 C 1.52997 * 109.47021 * 65.00201 * 10 9 7 13 13 N 1.46899 * 109.46912 * 184.99782 * 12 10 9 14 14 C 1.50699 * 109.46610 * 185.00088 * 10 9 7 15 15 C 1.38274 * 119.95280 * 299.72246 * 14 10 9 16 16 C 1.38126 * 120.06553 * 179.73093 * 15 14 10 17 17 C 1.38756 * 119.97298 * 0.54603 * 16 15 14 18 18 O 1.35906 * 120.05159 * 179.70693 * 17 16 15 19 19 C 1.38687 * 119.90441 * 359.72773 * 17 16 15 20 20 C 1.38283 * 119.92867 * 0.02562 * 19 17 16 21 21 Cl 1.73601 * 119.98734 * 180.02562 * 20 19 17 22 22 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47435 * 304.99553 * 12 10 9 26 26 H 1.09001 * 109.47641 * 65.00057 * 12 10 9 27 27 H 1.00900 * 111.00138 * 179.97438 * 13 12 10 28 28 H 1.00895 * 111.00162 * 303.95401 * 13 12 10 29 29 H 1.07997 * 119.96205 * 0.02562 * 15 14 10 30 30 H 1.08003 * 120.00965 * 180.25036 * 16 15 14 31 31 H 0.96701 * 113.99414 * 270.02708 * 18 17 16 32 32 H 1.08004 * 120.03926 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.5872 -3.1753 0.8421 12 6 3.6163 -3.3208 -1.3070 13 7 4.0004 -4.7378 -1.2574 14 6 5.5235 -2.6383 0.1234 15 6 6.2959 -2.0153 -0.8396 16 6 7.6725 -2.0106 -0.7260 17 6 8.2814 -2.6414 0.3495 18 8 9.6360 -2.6430 0.4596 19 6 7.5058 -3.2708 1.3116 20 6 6.1278 -3.2686 1.1966 21 17 5.1554 -4.0554 2.4004 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6796 0.8894 24 1 3.8746 -0.6807 -0.8905 25 1 2.5373 -3.2414 -1.4394 26 1 4.1215 -2.8365 -2.1426 27 1 3.7429 -5.2124 -2.1098 28 1 4.9869 -4.8387 -1.0709 29 1 5.8221 -1.5278 -1.6788 30 1 8.2748 -1.5203 -1.4765 31 1 10.0647 -3.3953 0.0292 32 1 7.9775 -3.7621 2.1498 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:27 Heat of formation + Delta-G solvation = -37.699622 kcal Electronic energy + Delta-G solvation = -16707.168144 eV Core-core repulsion = 13886.098803 eV Total energy + Delta-G solvation = -2821.069342 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93535 -37.64026 -36.17420 -35.13550 -32.79822 -31.32523 -30.72598 -28.93399 -25.69055 -23.22179 -22.68541 -21.88141 -19.37254 -18.54452 -17.03174 -16.04364 -15.84023 -15.40631 -15.09296 -14.45807 -14.13808 -13.97930 -13.60148 -13.08277 -12.66057 -12.54706 -12.50335 -12.01972 -11.44103 -11.23675 -11.06515 -10.89875 -10.68047 -10.52784 -9.99358 -9.85787 -9.74428 -9.13424 -8.79666 -8.54498 -8.32806 -8.16898 -6.04848 -4.02915 1.18398 1.24843 2.35062 3.28893 3.37788 3.41932 3.55206 4.14760 4.44183 4.85248 5.01537 5.06498 5.10840 5.29997 5.43511 5.62232 5.77252 5.88203 5.96442 6.20525 6.26194 6.33626 6.52726 6.67068 6.79448 6.87873 7.17683 7.35603 7.52159 7.58262 7.75513 7.82651 8.52146 9.00622 9.57232 11.08098 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.007091 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.917799 B = 3947.685727 C = 4345.102718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.047 4.047 11 H 0.096 0.904 12 C 0.078 3.922 13 N -0.849 5.849 14 C -0.057 4.057 15 C -0.094 4.094 16 C -0.140 4.140 17 C 0.097 3.903 18 O -0.497 6.497 19 C -0.138 4.138 20 C -0.018 4.018 21 Cl -0.055 7.055 22 H 0.263 0.737 23 H 0.019 0.981 24 H 0.012 0.988 25 H 0.094 0.906 26 H 0.018 0.982 27 H 0.333 0.667 28 H 0.329 0.671 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.387 0.613 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.362 -7.675 -1.829 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.039 4.039 10 C -0.066 4.066 11 H 0.114 0.886 12 C -0.052 4.052 13 N -0.377 5.377 14 C -0.058 4.058 15 C -0.112 4.112 16 C -0.159 4.159 17 C 0.052 3.948 18 O -0.306 6.306 19 C -0.158 4.158 20 C -0.045 4.045 21 Cl -0.026 7.026 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.036 0.964 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.153 0.847 30 H 0.147 0.853 31 H 0.242 0.758 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.508 -7.143 -0.780 17.092 hybrid contribution 1.102 0.794 -0.941 1.652 sum 16.610 -6.349 -1.721 17.865 Atomic orbital electron populations 1.69905 1.06218 1.26830 1.51005 1.24983 0.94666 0.98944 0.94616 0.86876 0.80576 0.84019 0.78470 1.20350 1.21345 1.18970 1.21086 0.88965 0.94590 1.50795 0.90456 1.19598 0.97485 0.90268 0.96513 1.20427 0.86816 0.99845 0.99501 0.88577 1.21857 1.02328 0.86000 0.95052 1.58783 1.22496 1.14454 1.41996 1.20304 0.98375 0.94691 0.92398 1.20969 0.92539 0.98504 0.99206 1.21455 0.95225 1.01210 0.97966 1.18163 0.82824 0.99318 0.94477 1.84852 1.15762 1.50630 1.79369 1.21211 0.91965 1.01795 1.00796 1.20672 0.90915 1.00013 0.92904 1.98371 1.70895 1.78655 1.54667 0.92739 0.96229 0.96992 0.88768 0.96410 0.85548 0.85997 0.84670 0.85279 0.75809 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.22 8.89 -34.44 -0.31 -14.52 16 8 H 0.08 2.29 7.32 -52.48 -0.38 1.91 16 9 C 0.00 -0.02 3.26 -27.88 -0.09 -0.11 16 10 C -0.05 -0.91 2.09 -91.77 -0.19 -1.10 16 11 H 0.10 2.02 6.16 -51.93 -0.32 1.70 16 12 C 0.08 1.38 6.02 -3.83 -0.02 1.35 16 13 N -0.85 -12.71 9.62 -10.37 -0.10 -12.81 16 14 C -0.06 -0.94 3.82 -104.56 -0.40 -1.34 16 15 C -0.09 -1.39 8.70 -39.61 -0.34 -1.73 16 16 C -0.14 -1.79 9.99 -39.43 -0.39 -2.19 16 17 C 0.10 1.23 6.70 -39.22 -0.26 0.96 16 18 O -0.50 -5.32 13.50 -19.44 -0.26 -5.59 16 19 C -0.14 -1.86 9.77 -39.40 -0.38 -2.25 16 20 C -0.02 -0.28 6.31 -39.52 -0.25 -0.53 16 21 Cl -0.06 -0.87 26.99 -51.86 -1.40 -2.27 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 24 H 0.01 0.27 7.01 -51.93 -0.36 -0.10 16 25 H 0.09 1.93 6.82 -51.93 -0.35 1.57 16 26 H 0.02 0.29 7.21 -51.93 -0.37 -0.08 16 27 H 0.33 4.23 9.08 -39.29 -0.36 3.88 16 28 H 0.33 4.58 8.07 -39.29 -0.32 4.26 16 29 H 0.14 1.93 7.12 -52.49 -0.37 1.56 16 30 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.39 2.13 9.06 45.56 0.41 2.54 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 282.79 15.07 4.26 4.26 Total: -1.00 -31.11 282.79 -6.96 -38.07 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.82 Total: 7.66 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.74 Total: -19.57 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.67 Total: -39.43 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.26 Total: -5.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.40 Total: -2.27 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.11 -6.96 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.371 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds