Wall clock time and date at job start Mon Mar 30 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47046 * 304.99824 * 10 9 7 12 12 C 1.52997 * 109.47021 * 65.00201 * 10 9 7 13 13 N 1.46899 * 109.46912 * 184.99782 * 12 10 9 14 14 C 1.50699 * 109.46610 * 185.00088 * 10 9 7 15 15 C 1.38274 * 119.95280 * 299.72246 * 14 10 9 16 16 C 1.38126 * 120.06553 * 179.73093 * 15 14 10 17 17 C 1.38756 * 119.97298 * 0.54603 * 16 15 14 18 18 O 1.35906 * 120.05159 * 179.70693 * 17 16 15 19 19 C 1.38687 * 119.90441 * 359.72773 * 17 16 15 20 20 C 1.38283 * 119.92867 * 0.02562 * 19 17 16 21 21 Cl 1.73601 * 119.98734 * 180.02562 * 20 19 17 22 22 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47435 * 304.99553 * 12 10 9 26 26 H 1.09001 * 109.47641 * 65.00057 * 12 10 9 27 27 H 1.00900 * 111.00138 * 179.97438 * 13 12 10 28 28 H 1.00895 * 111.00162 * 303.95401 * 13 12 10 29 29 H 1.07997 * 119.96205 * 0.02562 * 15 14 10 30 30 H 1.08003 * 120.00965 * 180.25036 * 16 15 14 31 31 H 0.96701 * 113.99414 * 270.02708 * 18 17 16 32 32 H 1.08004 * 120.03926 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.5872 -3.1753 0.8421 12 6 3.6163 -3.3208 -1.3070 13 7 4.0004 -4.7378 -1.2574 14 6 5.5235 -2.6383 0.1234 15 6 6.2959 -2.0153 -0.8396 16 6 7.6725 -2.0106 -0.7260 17 6 8.2814 -2.6414 0.3495 18 8 9.6360 -2.6430 0.4596 19 6 7.5058 -3.2708 1.3116 20 6 6.1278 -3.2686 1.1966 21 17 5.1554 -4.0554 2.4004 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6796 0.8894 24 1 3.8746 -0.6807 -0.8905 25 1 2.5373 -3.2414 -1.4394 26 1 4.1215 -2.8365 -2.1426 27 1 3.7429 -5.2124 -2.1098 28 1 4.9869 -4.8387 -1.0709 29 1 5.8221 -1.5278 -1.6788 30 1 8.2748 -1.5203 -1.4765 31 1 10.0647 -3.3953 0.0292 32 1 7.9775 -3.7621 2.1498 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:27 Heat of formation + Delta-G solvation = -61.057792 kcal Electronic energy + Delta-G solvation = -16708.181031 eV Core-core repulsion = 13886.098803 eV Total energy + Delta-G solvation = -2822.082228 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02545 -38.73503 -37.41067 -36.37741 -34.75876 -32.87737 -31.79752 -30.40721 -27.31615 -24.50364 -24.05833 -23.30406 -20.82443 -19.49434 -19.02078 -17.31647 -16.89891 -16.77490 -16.23828 -16.14009 -15.53179 -15.29472 -14.75232 -14.65955 -14.17729 -14.13680 -13.68770 -13.41763 -13.20193 -12.74726 -12.57453 -12.24961 -12.02742 -11.76472 -11.72384 -11.54051 -11.40014 -11.07764 -10.72736 -9.87368 -9.54834 -9.35913 -8.25494 -6.28069 0.10829 0.18896 1.20101 1.34110 1.37796 1.48565 2.37021 2.50061 3.09169 3.24620 3.69157 3.83005 3.88555 4.08983 4.32037 4.38252 4.44712 4.62304 4.77998 4.86287 4.96631 5.08305 5.21885 5.28906 5.35084 5.41830 5.64543 5.70181 5.72520 6.31107 6.32939 6.71486 6.78976 6.84423 7.35303 8.90915 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.007091 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.917799 B = 3947.685727 C = 4345.102718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.038 0.962 9 C 0.005 3.995 10 C -0.039 4.039 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.848 5.848 14 C -0.078 4.078 15 C -0.097 4.097 16 C -0.133 4.133 17 C 0.114 3.886 18 O -0.500 6.500 19 C -0.139 4.139 20 C -0.027 4.027 21 Cl -0.069 7.069 22 H 0.265 0.735 23 H 0.010 0.990 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.348 0.652 28 H 0.339 0.661 29 H 0.139 0.861 30 H 0.157 0.843 31 H 0.413 0.587 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.831 -7.161 -2.505 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.555 4.555 8 H 0.056 0.944 9 C -0.033 4.033 10 C -0.058 4.058 11 H 0.091 0.909 12 C -0.043 4.043 13 N -0.379 5.379 14 C -0.079 4.079 15 C -0.115 4.115 16 C -0.151 4.151 17 C 0.069 3.931 18 O -0.313 6.313 19 C -0.158 4.158 20 C -0.054 4.054 21 Cl -0.040 7.040 22 H 0.073 0.927 23 H 0.028 0.972 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.161 0.839 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.174 0.826 31 H 0.273 0.727 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 19.013 -6.670 -1.475 20.203 hybrid contribution 0.106 0.522 -0.729 0.903 sum 19.119 -6.148 -2.204 20.204 Atomic orbital electron populations 1.70062 1.08144 1.27894 1.52972 1.25898 0.95472 1.03045 0.94483 0.85802 0.79455 0.79007 0.79312 1.18711 1.21301 1.17612 1.21364 0.91474 0.93081 1.49564 0.94378 1.19484 0.94278 0.93200 0.96315 1.20109 0.89296 0.97072 0.99321 0.90897 1.21571 1.00090 0.87740 0.94939 1.58625 1.23362 1.12807 1.43098 1.19986 0.96364 0.97341 0.94164 1.21035 0.93446 0.98286 0.98782 1.21685 0.94457 1.00548 0.98445 1.18186 0.83704 0.97688 0.93565 1.84795 1.14450 1.52249 1.79849 1.21383 0.91028 1.01822 1.01599 1.20746 0.91683 1.00445 0.92477 1.98365 1.71477 1.78937 1.55174 0.92655 0.97191 0.95740 0.92515 0.94907 0.83924 0.84807 0.84348 0.82569 0.72707 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.94 44.40 27.47 68.60 1.88 46.28 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.52 -29.43 8.89 25.60 0.23 -29.20 16 8 H 0.04 2.40 7.32 -2.91 -0.02 2.38 16 9 C 0.01 0.24 3.26 29.85 0.10 0.33 16 10 C -0.04 -1.52 2.09 -11.54 -0.02 -1.55 16 11 H 0.07 3.16 6.16 -2.39 -0.01 3.15 16 12 C 0.09 3.12 6.02 86.30 0.52 3.64 16 13 N -0.85 -24.95 9.62 -186.72 -1.80 -26.74 16 14 C -0.08 -2.46 3.82 -19.83 -0.08 -2.54 16 15 C -0.10 -2.60 8.70 22.25 0.19 -2.41 16 16 C -0.13 -2.86 9.99 22.37 0.22 -2.64 16 17 C 0.11 2.42 6.70 22.50 0.15 2.57 16 18 O -0.50 -8.35 13.50 -92.49 -1.25 -9.60 16 19 C -0.14 -3.34 9.77 22.39 0.22 -3.12 16 20 C -0.03 -0.79 6.31 22.31 0.14 -0.65 16 21 Cl -0.07 -2.15 26.99 -2.72 -0.07 -2.22 16 22 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 23 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 24 H 0.02 1.07 7.01 -2.39 -0.02 1.05 16 25 H 0.06 2.44 6.82 -2.39 -0.02 2.42 16 26 H 0.03 1.06 7.21 -2.39 -0.02 1.04 16 27 H 0.35 8.52 9.08 -89.69 -0.81 7.70 16 28 H 0.34 8.98 8.07 -89.70 -0.72 8.25 16 29 H 0.14 3.56 7.12 -2.91 -0.02 3.54 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.41 2.47 9.06 -74.06 -0.67 1.80 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -68.65 282.79 0.11 -68.54 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -1.09 Total: 17.76 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 2.14 Total: -34.65 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.50 Total: -86.10 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.25 Total: -9.60 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.07 Total: -2.22 kcal Total: -68.65 0.11 -68.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.477 kcal (2) G-P(sol) polarization free energy of solvation -68.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds