Wall clock time and date at job start Mon Mar 30 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00287 * 2 1 4 4 H 1.48496 * 109.47222 * 270.00000 * 3 2 1 5 5 H 1.48500 * 109.47004 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46997 * 149.99800 * 3 2 1 7 7 C 1.37878 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47172 * 175.07829 * 9 7 2 11 11 H 1.08997 * 109.47286 * 54.57402 * 10 9 7 12 12 C 1.53007 * 109.46753 * 294.57902 * 10 9 7 13 13 N 1.46898 * 109.47066 * 175.60830 * 12 10 9 14 14 C 1.50700 * 109.47349 * 174.57856 * 10 9 7 15 15 C 1.38162 * 120.01946 * 59.99964 * 14 10 9 16 16 C 1.38345 * 120.04222 * 180.02562 * 15 14 10 17 17 Cl 1.73604 * 119.95777 * 180.02562 * 16 15 14 18 18 C 1.38391 * 120.08409 * 0.02562 * 16 15 14 19 19 C 1.38117 * 120.04054 * 359.97438 * 18 16 15 20 20 C 1.38696 * 120.02056 * 239.72612 * 14 10 9 21 21 O 1.35922 * 120.04119 * 359.97438 * 20 14 10 22 22 H 0.97006 * 119.99417 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47348 * 55.08017 * 9 7 2 24 24 H 1.09000 * 109.47436 * 295.07339 * 9 7 2 25 25 H 1.08995 * 109.46871 * 55.60934 * 12 10 9 26 26 H 1.09000 * 109.46875 * 295.60533 * 12 10 9 27 27 H 1.00891 * 111.00042 * 174.79244 * 13 12 10 28 28 H 1.00901 * 110.99982 * 298.74586 * 13 12 10 29 29 H 1.08005 * 119.98300 * 0.02562 * 15 14 10 30 30 H 1.07992 * 119.97738 * 179.97438 * 18 16 15 31 31 H 1.08003 * 120.01901 * 180.02562 * 19 18 16 32 32 H 0.96703 * 113.99649 * 90.00759 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6313 0.1245 11 1 3.5807 -3.2428 -0.6628 12 6 3.6263 -3.1961 1.4905 13 7 4.0232 -4.6082 1.5699 14 6 5.5225 -2.6450 -0.0097 15 6 6.3028 -1.9357 0.8830 16 6 7.6807 -1.9476 0.7600 17 17 8.6591 -1.0560 1.8833 18 6 8.2801 -2.6693 -0.2573 19 6 7.5034 -3.3796 -1.1516 20 6 6.1217 -3.3744 -1.0259 21 8 5.3559 -4.0778 -1.9013 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6053 0.8420 24 1 3.8745 -0.7593 -0.9313 25 1 2.5470 -3.1142 1.6189 26 1 4.1296 -2.6325 2.2760 27 1 3.8503 -4.9811 2.4913 28 1 3.5540 -5.1559 0.8642 29 1 5.8368 -1.3715 1.6774 30 1 9.3559 -2.6771 -0.3520 31 1 7.9716 -3.9431 -1.9452 32 1 5.0932 -3.5761 -2.6851 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:12 Heat of formation + Delta-G solvation = -40.315776 kcal Electronic energy + Delta-G solvation = -16762.678445 eV Core-core repulsion = 13941.495659 eV Total energy + Delta-G solvation = -2821.182787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85799 -36.91726 -36.24783 -35.48825 -32.81647 -31.67366 -29.83506 -29.04584 -25.85667 -23.21660 -22.44569 -21.77482 -19.33391 -18.20859 -17.07288 -16.14223 -15.81651 -15.15614 -15.06263 -14.15183 -14.13963 -13.83691 -13.47088 -13.10853 -12.63592 -12.53669 -12.19477 -11.95402 -11.75842 -11.31352 -11.04222 -10.87000 -10.75486 -10.43471 -10.16661 -9.76090 -9.72599 -9.25770 -8.63439 -8.60259 -8.18478 -8.10633 -6.11613 -4.10302 1.29131 1.50147 2.28350 3.25974 3.34448 3.37651 3.72773 4.38839 4.43944 4.95706 4.99136 5.11569 5.23231 5.34587 5.61133 5.71169 5.83459 5.98082 6.20414 6.22569 6.37339 6.47169 6.52984 6.66417 6.80114 6.90058 7.10947 7.32234 7.60562 7.69119 7.87697 7.88428 8.44104 8.91539 9.50465 11.01258 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.007375 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.293017 B = 3795.679628 C = 4460.380940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.035 4.035 11 H 0.081 0.919 12 C 0.075 3.925 13 N -0.852 5.852 14 C -0.047 4.047 15 C -0.091 4.091 16 C -0.041 4.041 17 Cl -0.083 7.083 18 C -0.114 4.114 19 C -0.137 4.137 20 C 0.113 3.887 21 O -0.492 6.492 22 H 0.263 0.737 23 H 0.021 0.979 24 H 0.013 0.987 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.331 0.669 28 H 0.337 0.663 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.443 -5.332 -0.210 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.054 4.054 11 H 0.099 0.901 12 C -0.055 4.055 13 N -0.381 5.381 14 C -0.047 4.047 15 C -0.109 4.109 16 C -0.068 4.068 17 Cl -0.054 7.054 18 C -0.133 4.133 19 C -0.155 4.155 20 C 0.068 3.932 21 O -0.301 6.301 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 15.166 -5.308 0.143 16.069 hybrid contribution -0.618 1.232 -0.063 1.380 sum 14.548 -4.076 0.080 15.109 Atomic orbital electron populations 1.69908 1.06273 1.26953 1.50839 1.24999 0.94688 0.99079 0.94477 0.86856 0.80513 0.83797 0.78642 1.20278 1.21334 1.18805 1.21054 0.89062 0.94421 1.51136 0.90879 1.19656 0.97329 0.90749 0.96622 1.20136 0.87656 0.99725 0.97869 0.90053 1.21798 0.99264 0.87796 0.96655 1.58790 1.66715 1.04030 1.08522 1.20354 0.97520 0.93106 0.93760 1.20818 0.90801 0.99558 0.99769 1.20849 0.91652 0.99638 0.94623 1.98342 1.70885 1.74689 1.61531 1.20705 0.99949 0.98054 0.94572 1.21241 0.93112 1.00686 1.00498 1.18319 0.88898 0.93567 0.92408 1.84803 1.70427 1.40254 1.34658 0.92672 0.96083 0.96883 0.93138 0.92002 0.85767 0.85118 0.84892 0.85320 0.85162 0.75560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 21.16 27.57 -169.99 -4.69 16.47 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.13 6.40 56.52 0.36 -5.77 16 7 C -0.52 -13.93 8.80 -34.44 -0.30 -14.23 16 8 H 0.07 2.11 7.54 -52.49 -0.40 1.71 16 9 C -0.01 -0.13 3.27 -27.88 -0.09 -0.22 16 10 C -0.03 -0.66 2.13 -91.77 -0.20 -0.86 16 11 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 12 C 0.07 1.36 5.94 -3.82 -0.02 1.33 16 13 N -0.85 -13.20 9.30 -10.37 -0.10 -13.29 16 14 C -0.05 -0.80 4.51 -104.48 -0.47 -1.27 16 15 C -0.09 -1.51 8.49 -39.57 -0.34 -1.84 16 16 C -0.04 -0.61 6.32 -39.49 -0.25 -0.86 16 17 Cl -0.08 -1.13 28.95 -51.86 -1.50 -2.63 16 18 C -0.11 -1.51 9.82 -39.57 -0.39 -1.90 16 19 C -0.14 -1.83 9.99 -39.44 -0.39 -2.22 16 20 C 0.11 1.74 6.68 -39.22 -0.26 1.48 16 21 O -0.49 -7.03 12.27 -19.50 -0.24 -7.27 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.48 6.30 -51.93 -0.33 0.15 16 24 H 0.01 0.29 7.82 -51.93 -0.41 -0.11 16 25 H 0.05 1.02 6.97 -51.93 -0.36 0.66 16 26 H 0.06 1.11 7.24 -51.93 -0.38 0.73 16 27 H 0.33 4.43 9.08 -39.30 -0.36 4.07 16 28 H 0.34 5.06 9.05 -39.29 -0.36 4.70 16 29 H 0.13 2.24 7.14 -52.48 -0.37 1.87 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.39 4.05 9.06 45.56 0.41 4.46 16 LS Contribution 285.70 15.07 4.31 4.31 Total: -1.00 -30.16 285.70 -7.18 -37.34 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.92 Total: 9.99 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.81 Total: -18.75 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.68 Total: -39.47 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.24 Total: -7.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.69 Total: 16.47 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.16 -7.18 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.976 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds