Wall clock time and date at job start Mon Mar 30 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00287 * 2 1 4 4 H 1.48496 * 109.47222 * 270.00000 * 3 2 1 5 5 H 1.48500 * 109.47004 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46997 * 149.99800 * 3 2 1 7 7 C 1.37878 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99784 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47172 * 175.07829 * 9 7 2 11 11 H 1.08997 * 109.47286 * 54.57402 * 10 9 7 12 12 C 1.53007 * 109.46753 * 294.57902 * 10 9 7 13 13 N 1.46898 * 109.47066 * 175.60830 * 12 10 9 14 14 C 1.50700 * 109.47349 * 174.57856 * 10 9 7 15 15 C 1.38162 * 120.01946 * 59.99964 * 14 10 9 16 16 C 1.38345 * 120.04222 * 180.02562 * 15 14 10 17 17 Cl 1.73604 * 119.95777 * 180.02562 * 16 15 14 18 18 C 1.38391 * 120.08409 * 0.02562 * 16 15 14 19 19 C 1.38117 * 120.04054 * 359.97438 * 18 16 15 20 20 C 1.38696 * 120.02056 * 239.72612 * 14 10 9 21 21 O 1.35922 * 120.04119 * 359.97438 * 20 14 10 22 22 H 0.97006 * 119.99417 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47348 * 55.08017 * 9 7 2 24 24 H 1.09000 * 109.47436 * 295.07339 * 9 7 2 25 25 H 1.08995 * 109.46871 * 55.60934 * 12 10 9 26 26 H 1.09000 * 109.46875 * 295.60533 * 12 10 9 27 27 H 1.00891 * 111.00042 * 174.79244 * 13 12 10 28 28 H 1.00901 * 110.99982 * 298.74586 * 13 12 10 29 29 H 1.08005 * 119.98300 * 0.02562 * 15 14 10 30 30 H 1.07992 * 119.97738 * 179.97438 * 18 16 15 31 31 H 1.08003 * 120.01901 * 180.02562 * 19 18 16 32 32 H 0.96703 * 113.99649 * 90.00759 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6313 0.1245 11 1 3.5807 -3.2428 -0.6628 12 6 3.6263 -3.1961 1.4905 13 7 4.0232 -4.6082 1.5699 14 6 5.5225 -2.6450 -0.0097 15 6 6.3028 -1.9357 0.8830 16 6 7.6807 -1.9476 0.7600 17 17 8.6591 -1.0560 1.8833 18 6 8.2801 -2.6693 -0.2573 19 6 7.5034 -3.3796 -1.1516 20 6 6.1217 -3.3744 -1.0259 21 8 5.3559 -4.0778 -1.9013 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6053 0.8420 24 1 3.8745 -0.7593 -0.9313 25 1 2.5470 -3.1142 1.6189 26 1 4.1296 -2.6325 2.2760 27 1 3.8503 -4.9811 2.4913 28 1 3.5540 -5.1559 0.8642 29 1 5.8368 -1.3715 1.6774 30 1 9.3559 -2.6771 -0.3520 31 1 7.9716 -3.9431 -1.9452 32 1 5.0932 -3.5761 -2.6851 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:12 Heat of formation + Delta-G solvation = -62.239996 kcal Electronic energy + Delta-G solvation = -16763.629151 eV Core-core repulsion = 13941.495659 eV Total energy + Delta-G solvation = -2822.133492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04017 -38.00497 -37.62729 -36.67399 -34.77931 -33.14003 -31.24581 -30.33853 -27.51824 -24.57632 -23.96145 -23.12062 -20.81384 -19.45520 -18.89059 -17.44795 -17.03503 -16.58427 -16.26661 -16.01564 -15.56170 -15.11142 -14.83516 -14.57250 -14.22143 -13.88360 -13.54168 -13.37398 -13.27143 -12.92087 -12.50607 -12.32358 -11.94098 -11.91125 -11.79899 -11.56122 -11.30444 -11.07089 -10.76736 -9.79856 -9.50751 -9.30428 -8.28604 -6.31269 0.16567 0.36334 1.18980 1.34275 1.36943 1.47351 2.35026 2.60043 3.06672 3.37285 3.70469 3.79215 3.91267 4.17054 4.32886 4.47564 4.53760 4.67636 4.87229 4.88816 5.06426 5.08579 5.13449 5.25804 5.33186 5.41438 5.64011 5.71209 5.78443 6.23915 6.29687 6.66941 6.74940 6.89428 7.32580 8.87513 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018449 B = 0.007375 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.293017 B = 3795.679628 C = 4460.380940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.517 4.517 8 H 0.037 0.963 9 C 0.001 3.999 10 C -0.025 4.025 11 H 0.070 0.930 12 C 0.084 3.916 13 N -0.843 5.843 14 C -0.068 4.068 15 C -0.104 4.104 16 C -0.049 4.049 17 Cl -0.074 7.074 18 C -0.103 4.103 19 C -0.129 4.129 20 C 0.109 3.891 21 O -0.501 6.501 22 H 0.265 0.735 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.019 0.981 26 H 0.062 0.938 27 H 0.345 0.655 28 H 0.341 0.659 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.436 -5.319 -0.703 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.555 4.555 8 H 0.056 0.944 9 C -0.037 4.037 10 C -0.044 4.044 11 H 0.088 0.912 12 C -0.047 4.047 13 N -0.373 5.373 14 C -0.069 4.069 15 C -0.123 4.123 16 C -0.076 4.076 17 Cl -0.045 7.045 18 C -0.121 4.121 19 C -0.148 4.148 20 C 0.064 3.936 21 O -0.313 6.313 22 H 0.074 0.926 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 18.174 -5.313 -0.353 18.938 hybrid contribution -1.537 1.121 0.080 1.904 sum 16.637 -4.191 -0.273 17.159 Atomic orbital electron populations 1.70056 1.08123 1.27949 1.52876 1.25879 0.95446 1.03013 0.94425 0.85837 0.79676 0.79083 0.79195 1.19281 1.21212 1.17101 1.21335 0.91434 0.92994 1.49732 0.94430 1.19540 0.94199 0.93445 0.96485 1.19847 0.89643 0.97104 0.97775 0.91165 1.21590 0.97184 0.89479 0.96470 1.58729 1.66271 1.02666 1.09613 1.20128 0.95863 0.95356 0.95537 1.20774 0.91820 0.99986 0.99737 1.20943 0.91164 1.00087 0.95370 1.98345 1.70330 1.74511 1.61315 1.21083 1.01489 0.96375 0.93173 1.21540 0.92060 1.00193 1.00968 1.18461 0.89942 0.93154 0.92055 1.84757 1.70541 1.40680 1.35314 0.92620 0.96112 0.96596 0.96299 0.91919 0.84252 0.84707 0.86003 0.82320 0.82129 0.73712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 2 C 0.01 0.53 5.47 84.65 0.46 1.00 16 3 Si 0.94 43.64 27.57 68.60 1.89 45.53 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -10.77 6.40 99.48 0.64 -10.13 16 7 C -0.52 -28.58 8.80 25.60 0.23 -28.35 16 8 H 0.04 2.28 7.54 -2.91 -0.02 2.26 16 9 C 0.00 0.05 3.27 29.85 0.10 0.15 16 10 C -0.02 -0.94 2.13 -11.54 -0.02 -0.97 16 11 H 0.07 2.80 6.99 -2.39 -0.02 2.78 16 12 C 0.08 3.07 5.94 86.31 0.51 3.59 16 13 N -0.84 -25.71 9.30 -186.72 -1.74 -27.44 16 14 C -0.07 -2.24 4.51 -19.77 -0.09 -2.33 16 15 C -0.10 -3.31 8.49 22.28 0.19 -3.12 16 16 C -0.05 -1.33 6.32 22.33 0.14 -1.19 16 17 Cl -0.07 -1.82 28.95 -2.72 -0.08 -1.90 16 18 C -0.10 -2.32 9.82 22.28 0.22 -2.10 16 19 C -0.13 -2.96 9.99 22.36 0.22 -2.74 16 20 C 0.11 3.10 6.68 22.50 0.15 3.25 16 21 O -0.50 -13.34 12.27 -92.67 -1.14 -14.48 16 22 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 23 H 0.02 0.94 6.30 -2.39 -0.02 0.92 16 24 H 0.02 0.71 7.82 -2.39 -0.02 0.69 16 25 H 0.02 0.80 6.97 -2.39 -0.02 0.78 16 26 H 0.06 2.27 7.24 -2.39 -0.02 2.25 16 27 H 0.34 8.95 9.08 -89.70 -0.81 8.14 16 28 H 0.34 10.10 9.05 -89.69 -0.81 9.29 16 29 H 0.12 4.03 7.14 -2.91 -0.02 4.01 16 30 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.40 7.70 9.06 -74.05 -0.67 7.03 16 Total: -1.00 -65.36 285.70 0.16 -65.20 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -1.19 Total: 24.07 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 2.11 Total: -32.81 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.44 Total: -85.62 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.14 Total: -14.48 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.89 Total: 45.53 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -65.36 0.16 -65.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.962 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds