Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46981 * 300.00027 * 3 2 1 6 6 H 1.48501 * 109.47184 * 59.99550 * 3 2 1 7 7 C 1.37875 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00448 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46936 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.46930 * 55.00518 * 10 9 7 12 12 C 1.52993 * 109.47660 * 295.00137 * 10 9 7 13 13 N 1.46905 * 109.47039 * 65.00109 * 12 10 9 14 14 C 1.50697 * 109.46992 * 174.99781 * 10 9 7 15 15 C 1.38182 * 120.01295 * 60.00084 * 14 10 9 16 16 C 1.38218 * 120.06671 * 179.97438 * 15 14 10 17 17 C 1.38406 * 120.10253 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 119.98744 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.02857 * 359.97438 * 17 16 15 20 20 C 1.38719 * 120.02051 * 239.73222 * 14 10 9 21 21 O 1.35899 * 120.04684 * 0.02562 * 20 14 10 22 22 H 0.97002 * 120.00322 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46804 * 60.00289 * 9 7 2 24 24 H 1.08993 * 109.46940 * 299.99628 * 9 7 2 25 25 H 1.09001 * 109.47393 * 305.00390 * 12 10 9 26 26 H 1.08998 * 109.47408 * 185.00036 * 12 10 9 27 27 H 1.00901 * 110.99869 * 56.04956 * 13 12 10 28 28 H 1.00896 * 110.99543 * 180.02562 * 13 12 10 29 29 H 1.08001 * 119.96310 * 359.97438 * 15 14 10 30 30 H 1.08004 * 119.94985 * 179.97438 * 16 15 14 31 31 H 1.07998 * 120.03774 * 179.97438 * 19 17 16 32 32 H 0.96704 * 113.99733 * 90.00263 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5551 0.8425 12 6 3.0402 -3.6535 -1.3067 13 7 3.8633 -2.4385 -1.3714 14 6 1.4960 -4.9636 0.1244 15 6 0.5662 -5.3197 -0.8337 16 6 -0.1213 -6.5135 -0.7214 17 6 0.1192 -7.3550 0.3508 18 17 -0.7465 -8.8534 0.4892 19 6 1.0486 -7.0028 1.3116 20 6 1.7434 -5.8074 1.1973 21 8 2.6612 -5.4611 2.1379 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.3511 -3.6709 -2.1511 26 1 3.6849 -4.5316 -1.3457 27 1 4.4657 -2.3665 -0.5652 28 1 4.3980 -2.4092 -2.2265 29 1 0.3764 -4.6645 -1.6710 30 1 -0.8480 -6.7898 -1.4711 31 1 1.2362 -7.6591 2.1486 32 1 2.2959 -4.9539 2.8757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -28.962396 kcal Electronic energy + Delta-G solvation = -16640.421808 eV Core-core repulsion = 13819.731341 eV Total energy + Delta-G solvation = -2820.690467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88992 -36.95962 -36.39314 -35.51877 -32.36256 -31.54307 -29.90000 -28.42879 -25.78263 -23.01871 -22.58961 -21.94535 -19.33353 -18.29300 -16.69487 -15.94216 -15.84734 -15.09762 -14.57831 -14.32714 -13.93142 -13.83279 -13.58086 -13.10146 -12.82371 -12.31118 -12.07937 -11.63594 -11.43183 -11.18126 -10.93067 -10.83459 -10.65324 -10.33543 -10.25645 -9.81103 -9.47624 -8.94809 -8.69620 -8.19427 -8.17744 -7.48157 -5.79247 -3.72799 1.28368 1.36316 2.15550 3.43029 3.50604 3.55214 3.66845 4.42047 4.63996 4.94174 5.04920 5.14392 5.50474 5.54346 5.61079 5.77215 5.80410 5.93549 6.01310 6.23320 6.25536 6.47457 6.49661 6.79552 6.91847 7.03807 7.73682 7.80017 7.82356 7.89032 8.12070 8.28838 8.64314 9.34835 9.86702 11.33849 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.005203 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.167063 B = 5380.484576 C = 5596.804403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.044 3.956 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.476 4.476 8 H 0.085 0.915 9 C 0.040 3.960 10 C -0.052 4.052 11 H 0.075 0.925 12 C 0.092 3.908 13 N -0.813 5.813 14 C -0.072 4.072 15 C -0.085 4.085 16 C -0.118 4.118 17 C -0.034 4.034 18 Cl -0.082 7.082 19 C -0.140 4.140 20 C 0.113 3.887 21 O -0.492 6.492 22 H 0.253 0.747 23 H 0.016 0.984 24 H 0.009 0.991 25 H 0.064 0.936 26 H 0.002 0.998 27 H 0.335 0.665 28 H 0.320 0.680 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 -13.949 0.531 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.154 4.154 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.003 3.997 10 C -0.071 4.071 11 H 0.093 0.907 12 C -0.039 4.039 13 N -0.342 5.342 14 C -0.073 4.073 15 C -0.103 4.103 16 C -0.137 4.137 17 C -0.060 4.060 18 Cl -0.053 7.053 19 C -0.159 4.159 20 C 0.068 3.932 21 O -0.303 6.303 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.027 0.973 25 H 0.082 0.918 26 H 0.020 0.980 27 H 0.148 0.852 28 H 0.132 0.868 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.878 -13.872 0.196 14.000 hybrid contribution 0.657 0.389 0.317 0.827 sum 2.536 -13.483 0.512 13.729 Atomic orbital electron populations 1.69991 1.06038 1.25813 1.53562 1.25001 0.94636 0.99002 0.96723 0.86558 0.80187 0.84362 0.76854 1.19836 1.21704 1.21944 1.21610 0.94469 0.89416 1.46017 0.89766 1.19117 0.92800 0.90941 0.96837 1.20413 0.98022 0.91079 0.97569 0.90664 1.21569 0.95378 0.89151 0.97834 1.59007 1.29465 1.40031 1.05712 1.20746 0.96119 0.96367 0.94103 1.21010 0.94801 0.95267 0.99270 1.21045 1.00980 0.94297 0.97349 1.20574 0.98070 0.89298 0.98086 1.98344 1.76090 1.32924 1.97929 1.21168 0.96539 0.98277 0.99928 1.18125 0.91073 0.92636 0.91378 1.84766 1.34370 1.75926 1.35227 0.93705 0.96617 0.97256 0.91801 0.98029 0.85170 0.86836 0.84336 0.85074 0.84935 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.04 1.25 5.46 -17.82 -0.10 1.15 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.48 -12.68 7.94 -34.44 -0.27 -12.95 16 8 H 0.08 2.14 5.11 -52.49 -0.27 1.87 16 9 C 0.04 0.97 4.19 -27.88 -0.12 0.86 16 10 C -0.05 -1.00 2.26 -91.78 -0.21 -1.21 16 11 H 0.08 1.47 6.99 -51.92 -0.36 1.11 16 12 C 0.09 1.62 5.90 -3.82 -0.02 1.60 16 13 N -0.81 -14.54 6.70 -10.37 -0.07 -14.60 16 14 C -0.07 -1.23 4.79 -104.47 -0.50 -1.73 16 15 C -0.09 -1.35 8.81 -39.61 -0.35 -1.70 16 16 C -0.12 -1.66 9.83 -39.53 -0.39 -2.04 16 17 C -0.03 -0.47 6.32 -39.52 -0.25 -0.72 16 18 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 19 C -0.14 -1.97 9.77 -39.40 -0.38 -2.35 16 20 C 0.11 1.76 6.68 -39.22 -0.26 1.50 16 21 O -0.49 -7.11 12.27 -19.42 -0.24 -7.35 16 22 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 1.15 7.57 -51.93 -0.39 0.76 16 26 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 27 H 0.34 5.70 8.27 -39.29 -0.33 5.37 16 28 H 0.32 4.84 9.08 -39.29 -0.36 4.49 16 29 H 0.14 2.18 7.22 -52.49 -0.38 1.80 16 30 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.39 4.23 9.06 45.56 0.41 4.64 16 LS Contribution 285.60 15.07 4.30 4.30 Total: -1.00 -30.97 285.60 -7.53 -38.50 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.89 Total: 9.03 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.85 Total: -17.60 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.67 Total: -41.29 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.24 Total: -7.35 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.97 -7.53 -38.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.538 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds