Wall clock time and date at job start Mon Mar 30 2020 06:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46981 * 300.00027 * 3 2 1 6 6 H 1.48501 * 109.47184 * 59.99550 * 3 2 1 7 7 C 1.37875 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00448 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46936 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.46930 * 55.00518 * 10 9 7 12 12 C 1.52993 * 109.47660 * 295.00137 * 10 9 7 13 13 N 1.46905 * 109.47039 * 65.00109 * 12 10 9 14 14 C 1.50697 * 109.46992 * 174.99781 * 10 9 7 15 15 C 1.38182 * 120.01295 * 60.00084 * 14 10 9 16 16 C 1.38218 * 120.06671 * 179.97438 * 15 14 10 17 17 C 1.38406 * 120.10253 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 119.98744 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.02857 * 359.97438 * 17 16 15 20 20 C 1.38719 * 120.02051 * 239.73222 * 14 10 9 21 21 O 1.35899 * 120.04684 * 0.02562 * 20 14 10 22 22 H 0.97002 * 120.00322 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46804 * 60.00289 * 9 7 2 24 24 H 1.08993 * 109.46940 * 299.99628 * 9 7 2 25 25 H 1.09001 * 109.47393 * 305.00390 * 12 10 9 26 26 H 1.08998 * 109.47408 * 185.00036 * 12 10 9 27 27 H 1.00901 * 110.99869 * 56.04956 * 13 12 10 28 28 H 1.00896 * 110.99543 * 180.02562 * 13 12 10 29 29 H 1.08001 * 119.96310 * 359.97438 * 15 14 10 30 30 H 1.08004 * 119.94985 * 179.97438 * 16 15 14 31 31 H 1.07998 * 120.03774 * 179.97438 * 19 17 16 32 32 H 0.96704 * 113.99733 * 90.00263 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5551 0.8425 12 6 3.0402 -3.6535 -1.3067 13 7 3.8633 -2.4385 -1.3714 14 6 1.4960 -4.9636 0.1244 15 6 0.5662 -5.3197 -0.8337 16 6 -0.1213 -6.5135 -0.7214 17 6 0.1192 -7.3550 0.3508 18 17 -0.7465 -8.8534 0.4892 19 6 1.0486 -7.0028 1.3116 20 6 1.7434 -5.8074 1.1973 21 8 2.6612 -5.4611 2.1379 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.3511 -3.6709 -2.1511 26 1 3.6849 -4.5316 -1.3457 27 1 4.4657 -2.3665 -0.5652 28 1 4.3980 -2.4092 -2.2265 29 1 0.3764 -4.6645 -1.6710 30 1 -0.8480 -6.7898 -1.4711 31 1 1.2362 -7.6591 2.1486 32 1 2.2959 -4.9539 2.8757 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:46 Heat of formation + Delta-G solvation = -50.349488 kcal Electronic energy + Delta-G solvation = -16641.349222 eV Core-core repulsion = 13819.731341 eV Total energy + Delta-G solvation = -2821.617881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09802 -38.04871 -37.75152 -36.77448 -34.38459 -32.93089 -31.09197 -30.07068 -27.47259 -24.49132 -24.15432 -23.25868 -20.83179 -19.45826 -18.46661 -17.21265 -17.13613 -16.50510 -16.33024 -15.84516 -15.36671 -15.06041 -15.03863 -14.36594 -14.08520 -14.04529 -13.40487 -13.33021 -12.92250 -12.78800 -12.44881 -12.33950 -12.07736 -11.96735 -11.59992 -11.48356 -11.24125 -10.85857 -10.35721 -9.86235 -9.42646 -8.96619 -7.95059 -5.93282 0.10244 0.20884 1.07452 1.48049 1.50128 1.62343 2.49435 2.59856 3.30924 3.40534 3.70927 3.81004 4.03974 4.24121 4.29929 4.43216 4.49837 4.56645 4.77602 4.88980 5.08370 5.14026 5.23163 5.26014 5.51498 5.69362 5.70440 5.89381 6.07481 6.50841 6.59465 6.77429 6.89207 7.24893 7.70103 9.18781 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032582 B = 0.005203 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.167063 B = 5380.484576 C = 5596.804403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.018 4.018 3 Si 0.954 3.046 4 H -0.256 1.256 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.474 4.474 8 H 0.099 0.901 9 C 0.049 3.951 10 C -0.038 4.038 11 H 0.072 0.928 12 C 0.097 3.903 13 N -0.833 5.833 14 C -0.098 4.098 15 C -0.095 4.095 16 C -0.116 4.116 17 C -0.032 4.032 18 Cl -0.062 7.062 19 C -0.137 4.137 20 C 0.112 3.888 21 O -0.499 6.499 22 H 0.250 0.750 23 H -0.011 1.011 24 H -0.022 1.022 25 H 0.056 0.944 26 H 0.022 0.978 27 H 0.340 0.660 28 H 0.337 0.663 29 H 0.131 0.869 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -15.155 0.710 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.211 4.211 3 Si 0.782 3.218 4 H -0.180 1.180 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.512 4.512 8 H 0.117 0.883 9 C 0.012 3.988 10 C -0.056 4.056 11 H 0.091 0.909 12 C -0.034 4.034 13 N -0.364 5.364 14 C -0.099 4.099 15 C -0.113 4.113 16 C -0.135 4.135 17 C -0.059 4.059 18 Cl -0.033 7.033 19 C -0.156 4.156 20 C 0.066 3.934 21 O -0.311 6.311 22 H 0.059 0.941 23 H 0.007 0.993 24 H -0.004 1.004 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.994 -15.087 0.380 15.386 hybrid contribution 0.284 0.654 0.279 0.766 sum 3.279 -14.433 0.658 14.815 Atomic orbital electron populations 1.70145 1.07767 1.26339 1.55711 1.25847 0.95353 1.02723 0.97177 0.85542 0.79769 0.80159 0.76289 1.18009 1.22158 1.22086 1.22133 0.95374 0.90115 1.43612 0.88297 1.18922 0.93098 0.92799 0.93940 1.20098 0.96812 0.90358 0.98363 0.90936 1.21468 0.95352 0.89966 0.96619 1.58877 1.30201 1.40370 1.06949 1.20629 0.97378 0.96147 0.95734 1.21014 0.95128 0.96081 0.99079 1.21226 1.00830 0.93473 0.97930 1.20703 0.97728 0.89851 0.97623 1.98355 1.75583 1.31537 1.97844 1.21350 0.95964 0.97835 1.00474 1.18160 0.91204 0.92937 0.91055 1.84718 1.34544 1.76248 1.35607 0.94090 0.99314 1.00401 0.92568 0.95998 0.84601 0.84991 0.85104 0.82972 0.82898 0.73360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 13.29 21.45 0.28 -58.63 16 2 C -0.02 -1.00 5.46 84.66 0.46 -0.54 16 3 Si 0.95 45.18 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.47 -25.33 7.94 25.60 0.20 -25.13 16 8 H 0.10 4.92 5.11 -2.91 -0.01 4.90 16 9 C 0.05 2.47 4.19 29.85 0.13 2.59 16 10 C -0.04 -1.44 2.26 -11.54 -0.03 -1.47 16 11 H 0.07 2.79 6.99 -2.38 -0.02 2.78 16 12 C 0.10 3.36 5.90 86.30 0.51 3.86 16 13 N -0.83 -28.68 6.70 -186.72 -1.25 -29.93 16 14 C -0.10 -3.30 4.79 -19.76 -0.09 -3.40 16 15 C -0.09 -2.99 8.81 22.25 0.20 -2.79 16 16 C -0.12 -3.09 9.83 22.31 0.22 -2.87 16 17 C -0.03 -0.83 6.32 22.31 0.14 -0.69 16 18 Cl -0.06 -1.36 28.95 -2.72 -0.08 -1.43 16 19 C -0.14 -3.57 9.77 22.39 0.22 -3.35 16 20 C 0.11 3.33 6.68 22.50 0.15 3.48 16 21 O -0.50 -13.63 12.27 -92.41 -1.13 -14.77 16 22 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 23 H -0.01 -0.63 7.57 -2.39 -0.02 -0.65 16 24 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 25 H 0.06 2.02 7.57 -2.39 -0.02 2.00 16 26 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.34 11.00 8.27 -89.69 -0.74 10.26 16 28 H 0.34 9.63 9.08 -89.70 -0.81 8.82 16 29 H 0.13 4.23 7.22 -2.91 -0.02 4.21 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.41 8.26 9.06 -74.05 -0.67 7.59 16 Total: -1.00 -65.89 285.60 0.90 -64.99 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -1.05 Total: 22.84 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 2.10 Total: -30.28 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -0.97 Total: -88.56 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.13 Total: -14.77 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.43 kcal Total: -65.89 0.90 -64.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.645 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds