Wall clock time and date at job start Mon Mar 30 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47046 * 304.99824 * 10 9 7 12 12 C 1.52997 * 109.47021 * 65.00201 * 10 9 7 13 13 N 1.46899 * 109.46912 * 184.99782 * 12 10 9 14 14 C 1.50699 * 109.46610 * 185.00088 * 10 9 7 15 15 C 1.38177 * 120.01696 * 299.71871 * 14 10 9 16 16 C 1.38219 * 120.06834 * 179.77188 * 15 14 10 17 17 C 1.38409 * 120.09844 * 0.51462 * 16 15 14 18 18 Cl 1.73602 * 119.98633 * 179.76897 * 17 16 15 19 19 C 1.38236 * 120.02853 * 359.74090 * 17 16 15 20 20 C 1.38723 * 120.01707 * 120.00561 * 14 10 9 21 21 O 1.35905 * 120.04631 * 359.94553 * 20 14 10 22 22 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47435 * 304.99553 * 12 10 9 26 26 H 1.09001 * 109.47641 * 65.00057 * 12 10 9 27 27 H 1.00900 * 111.00138 * 179.97438 * 13 12 10 28 28 H 1.00895 * 111.00162 * 303.95401 * 13 12 10 29 29 H 1.08000 * 119.96208 * 0.02724 * 15 14 10 30 30 H 1.07997 * 119.95026 * 180.23445 * 16 15 14 31 31 H 1.08003 * 120.03382 * 180.02562 * 19 17 16 32 32 H 0.96698 * 113.99464 * 90.00093 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.5872 -3.1753 0.8421 12 6 3.6163 -3.3208 -1.3070 13 7 4.0004 -4.7378 -1.2574 14 6 5.5235 -2.6383 0.1234 15 6 6.2966 -2.0162 -0.8382 16 6 7.6741 -2.0130 -0.7237 17 6 8.2829 -2.6420 0.3485 18 17 10.0135 -2.6414 0.4862 19 6 7.5136 -3.2701 1.3100 20 6 6.1308 -3.2695 1.1991 21 8 5.3721 -3.8859 2.1432 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6796 0.8894 24 1 3.8746 -0.6807 -0.8905 25 1 2.5373 -3.2414 -1.4394 26 1 4.1215 -2.8365 -2.1426 27 1 3.7429 -5.2124 -2.1098 28 1 4.9869 -4.8387 -1.0709 29 1 5.8239 -1.5284 -1.6778 30 1 8.2764 -1.5230 -1.4743 31 1 7.9885 -3.7605 2.1468 32 1 5.1889 -4.8164 1.9545 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:48 Heat of formation + Delta-G solvation = -39.772445 kcal Electronic energy + Delta-G solvation = -16702.817593 eV Core-core repulsion = 13881.658367 eV Total energy + Delta-G solvation = -2821.159226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02831 -37.03147 -36.47596 -35.53565 -32.82960 -31.57015 -30.09160 -29.18123 -25.83121 -23.26957 -22.61716 -21.86205 -19.29267 -18.36883 -16.96665 -16.16534 -15.97931 -15.49685 -14.94259 -14.47545 -14.09278 -14.01629 -13.60851 -13.14948 -12.66657 -12.59385 -12.40153 -11.95438 -11.54486 -11.45749 -11.02681 -10.98301 -10.88252 -10.46551 -10.00495 -9.96416 -9.72859 -9.15139 -8.81480 -8.55561 -8.40415 -8.23462 -6.06066 -4.04195 1.18244 1.25101 2.06834 3.28339 3.37268 3.41606 3.57077 4.33996 4.43432 4.83528 4.96662 5.05033 5.09362 5.28698 5.43257 5.61896 5.76952 5.88591 5.96385 6.14041 6.28433 6.29597 6.52121 6.69224 6.80219 6.85989 7.16413 7.35278 7.49650 7.71770 7.74308 7.80103 8.50536 8.98842 9.56119 11.06907 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.006156 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.224051 B = 4547.146904 C = 5085.317778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.037 4.037 11 H 0.092 0.908 12 C 0.074 3.926 13 N -0.851 5.851 14 C -0.078 4.078 15 C -0.095 4.095 16 C -0.120 4.120 17 C -0.033 4.033 18 Cl -0.080 7.080 19 C -0.140 4.140 20 C 0.122 3.878 21 O -0.485 6.485 22 H 0.263 0.737 23 H 0.020 0.980 24 H 0.011 0.989 25 H 0.094 0.906 26 H 0.019 0.981 27 H 0.335 0.665 28 H 0.327 0.673 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.384 -7.610 -1.887 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.095 0.905 9 C -0.039 4.039 10 C -0.056 4.056 11 H 0.110 0.890 12 C -0.055 4.055 13 N -0.380 5.380 14 C -0.079 4.079 15 C -0.113 4.113 16 C -0.138 4.138 17 C -0.059 4.059 18 Cl -0.051 7.051 19 C -0.159 4.159 20 C 0.077 3.923 21 O -0.295 6.295 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.037 0.963 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.872 -6.983 -0.976 17.367 hybrid contribution 1.189 0.821 -0.973 1.742 sum 17.061 -6.162 -1.949 18.244 Atomic orbital electron populations 1.69904 1.06232 1.26864 1.50991 1.24984 0.94670 0.98981 0.94578 0.86867 0.80573 0.83976 0.78464 1.20342 1.21322 1.18983 1.21086 0.88998 0.94564 1.50858 0.90521 1.19591 0.97419 0.90340 0.96502 1.20200 0.86977 0.99710 0.98733 0.89014 1.21910 1.02392 0.85854 0.95383 1.58840 1.22199 1.14682 1.42244 1.20829 0.98418 0.96077 0.92559 1.20995 0.92253 0.98556 0.99495 1.21017 0.94967 1.00262 0.97580 1.20585 0.83957 1.03474 0.97922 1.98350 1.11208 1.97629 1.97938 1.21224 0.93021 1.02285 0.99374 1.18114 0.88022 0.97148 0.89056 1.84848 1.71142 1.28828 1.44719 0.92721 0.96192 0.97036 0.88752 0.96283 0.85391 0.86182 0.84673 0.85153 0.84783 0.75234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.19 8.89 -34.44 -0.31 -14.50 16 8 H 0.08 2.26 7.32 -52.48 -0.38 1.87 16 9 C 0.00 -0.02 3.26 -27.88 -0.09 -0.11 16 10 C -0.04 -0.71 2.16 -91.77 -0.20 -0.90 16 11 H 0.09 1.88 6.99 -51.93 -0.36 1.52 16 12 C 0.07 1.28 6.02 -3.83 -0.02 1.25 16 13 N -0.85 -11.80 9.62 -10.37 -0.10 -11.90 16 14 C -0.08 -1.26 3.83 -104.47 -0.40 -1.66 16 15 C -0.09 -1.38 8.70 -39.61 -0.34 -1.73 16 16 C -0.12 -1.55 9.83 -39.53 -0.39 -1.94 16 17 C -0.03 -0.42 6.32 -39.52 -0.25 -0.67 16 18 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.42 16 19 C -0.14 -1.86 9.77 -39.40 -0.38 -2.24 16 20 C 0.12 1.81 6.68 -39.22 -0.26 1.55 16 21 O -0.49 -7.04 12.27 -19.44 -0.24 -7.28 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 24 H 0.01 0.26 7.01 -51.93 -0.36 -0.11 16 25 H 0.09 1.89 6.82 -51.93 -0.35 1.53 16 26 H 0.02 0.31 7.21 -51.93 -0.37 -0.07 16 27 H 0.33 4.00 9.08 -39.29 -0.36 3.64 16 28 H 0.33 4.10 8.07 -39.29 -0.32 3.78 16 29 H 0.14 1.91 7.13 -52.49 -0.37 1.54 16 30 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 32 H 0.39 3.95 9.06 45.56 0.41 4.37 16 LS Contribution 284.26 15.07 4.28 4.28 Total: -1.00 -30.49 284.26 -7.06 -37.54 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.86 Total: 8.54 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.74 Total: -19.06 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.67 Total: -38.48 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.24 Total: -7.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.49 -7.06 -37.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.228 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds